Difference between revisions of "TSS:Hg 141889.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=AB385359:4 ENST00000548265.1:-13 uc059fzx.1:-13 ENST00000547217.5:-16 uc059fzw.1:-16 BC050351:-21 BC065220:-101 ENST00000447393.5:-159 uc001yqu.4:-159 A...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |PACS1L= | ||
|all_trans=AB385359:4 ENST00000548265.1:-13 uc059fzx.1:-13 ENST00000547217.5:-16 uc059fzw.1:-16 BC050351:-21 BC065220:-101 ENST00000447393.5:-159 uc001yqu.4:-159 AB011174:-159 ENST00000325438.12:-488 NM_015197:-488 NM_001100913:-488 uc001yqt.4:-488 AY320284:-488 | |all_trans=AB385359:4 ENST00000548265.1:-13 uc059fzx.1:-13 ENST00000547217.5:-16 uc059fzw.1:-16 BC050351:-21 BC065220:-101 ENST00000447393.5:-159 uc001yqu.4:-159 AB011174:-159 ENST00000325438.12:-488 NM_015197:-488 NM_001100913:-488 uc001yqt.4:-488 AY320284:-488 | ||
|chr=chr14 | |chr=chr14 | ||
| Line 6: | Line 7: | ||
|distance_to_tss=492 | |distance_to_tss=492 | ||
|end=105314911 | |end=105314911 | ||
| + | |end_of_center_position=105314907 | ||
|entrez_id=23241 | |entrez_id=23241 | ||
|gc_percent=0.835821 | |gc_percent=0.835821 | ||
| − | |gene_alias=PACS-2 | + | |gene_alias=PACS-2 |
|gene_description=phosphofurin acidic cluster sorting protein 2 | |gene_description=phosphofurin acidic cluster sorting protein 2 | ||
|gene_id=23241 | |gene_id=23241 | ||
| Line 24: | Line 26: | ||
|species=human | |species=human | ||
|start=105314902 | |start=105314902 | ||
| + | |start_of_center_position=105314906 | ||
|strand=+ | |strand=+ | ||
|transcript_name=AB385359 | |transcript_name=AB385359 | ||
Revision as of 06:43, 14 May 2019
Basic information about the TSS
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| Start of the center position in the TSS region: | 105314906 |
|---|---|
| End of the center position in the TSS region: | 105314907 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | AB385359 |
|---|---|
| Distance: | 4 |
| Num_trans: | 15 |
| All_trans: | AB385359:4 ENST00000548265.1:-13 uc059fzx.1:-13 ENST00000547217.5:-16 uc059fzw.1:-16 BC050351:-21 BC065220:-101 ENST00000447393.5:-159 uc001yqu.4:-159 AB011174:-159 ENST00000325438.12:-488 NM_015197:-488 NM_001100913:-488 uc001yqt.4:-488 AY320284:-488 |
TATA-Box annotation
| Distance to TSS: | 492 |
|---|---|
| Nearest PromoterID: | NM_001100913 |
| Entrez ID: | 23241 |
| Nearest Unigene: | Hs.525626 |
| Nearest Refseq: | NM_015197 |
| Nearest Ensembl: | ENSG00000179364 |
| Gene Name: | phosphofurin acidic cluster sorting protein 2 |
| Gene Alias: | PACS-2 |
| Gene Description: | phosphofurin acidic cluster sorting protein 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.185 |
| GC%: | 0.835821 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
