Template: TSSDetail: Difference between revisions

From referenceTSS
Jump to: navigation, search
mNo edit summary
No edit summary
 
(3 intermediate revisions by the same user not shown)
Line 46: Line 46:
}
}
.highlight { background-color: yellow }
.highlight { background-color: yellow }
.captop caption {
caption-side: top;
}
.hm {
z-index: 110;
}
.express_gf {
position:absolute;
background-color:gray;
display: block;
top:0;
left: 0;
z-index: 50;
}
.express_data {
position:absolute;
align: left;
top:0;
left: 0;
display:block;
z-index: 100;
}
</style>
</style>
</html>
</html>
Line 53: Line 75:
<table class="inner" >
<table class="inner" >
<tr><th scope="row" class="item_label_long">TSS ID:</th><td>{{{tss_id}}}</td></tr>
<tr><th scope="row" class="item_label_long">TSS ID:</th><td>{{{tss_id}}}</td></tr>
{{#if:{{{tss_id_v3|}}}|<tr><th scope="row" class="item_label_long">TSS ID(Version3):</th><td>{{#arraymap:{{{tss_id_v3}}}|;|x|[[TSS:x|x]]|<br />}} }}
<tr><th scope="row" class="item_label_long">Species:</th><td>{{{species|}}}</td></tr>
<tr><th scope="row" class="item_label_long">Species:</th><td>{{{species|}}}</td></tr>
<tr><th scope="row" class="item_label_long">Chr:</th><td>{{{chr|}}}</td></tr>
<tr><th scope="row" class="item_label_long">Chr:</th><td>{{{chr|}}}</td></tr>
<tr><th scope="row" class="item_label_long">TSS Classification:</th><td>{{{tss_classification|}}}</td></tr>
</table></td><td style="width:4%;"></td><td style="width:48%;">
</table></td><td style="width:4%;"></td><td style="width:48%;">
<table class="inner" >
<table class="inner" >
<tr><th scope="row" class="item_label_middle">Start:</th><td>{{{start|}}}</td></tr>
{{#if:{{{tss_id_v3|}}}||<tr><th scope="row" class="item_label_middle">Start:</th><td>{{{start|}}}</td></tr>
<tr><th scope="row" class="item_label_middle">End:</th><td>{{{end|}}}</td></tr>
<tr><th scope="row" class="item_label_middle">End:</th><td>{{{end|}}}</td></tr>}}
<tr><th scope="row" class="item_label_middle">Strand:</th><td>{{{strand|}}}</td></tr>
<tr><th scope="row" class="item_label_middle">Strand:</th><td>{{{strand|}}}</td></tr>
<tr><th scope="row" class="item_label_middle">TSS Score:</th><td>{{{tss_score|}}}</td></tr>
</table>
</table>
</td></tr>
</td></tr>
<tr style='border-bottom-style: dotted;border-bottom-width: thin;' colspan='2'><th>TSS cluster detected<sup>*</sup></th><td>{{{tss_cluster_detected|}}}</td></tr>
</table>
</table>
<p style='word-wrap: break-word;overflow-wrap: break-word;'><span style='font-size:0.7em;'>&nbsp;&nbsp;* The number of TSS cluster called studies (maximum {{#ifeq:{{{species|}}}|human|16|5}}) </span></p>
<!--
<table class="inner" width="420px">
<table class="inner" width="420px">
<tr><th scope="row" class="item_label_long2">Start of the center position in the TSS region:</th><td>{{{start_of_center_position|}}}</td></tr>
<tr><th scope="row" class="item_label_long2">Start of the center position in the TSS region:</th><td>{{{start_of_center_position|}}}</td></tr>
<tr><th scope="row" class="item_label_long2">End of the center position in the TSS region:</th><td>{{{end_of_center_position|}}}</td></tr>
<tr><th scope="row" class="item_label_long2">End of the center position in the TSS region:</th><td>{{{end_of_center_position|}}}</td></tr>
</table>
</table>
-->
<br/>
<br/>
<br/>
<br/>
Line 87: Line 112:
<tr><th scope="row" align="left">Gene_source:</th><td>{{{gene_source|}}}</td></tr>
<tr><th scope="row" align="left">Gene_source:</th><td>{{{gene_source|}}}</td></tr>
</table></td></tr>
</table></td></tr>
</table>
<br/>
<br/>
<span class="section_head">Transcript annotation</span>
<hr width="200px" size="2" style="text-align:left;margin-left:0" noshade>
<table class="inner" border="0" >
<tr><th scope="row" align="left">Transcript_name:</th><td>{{{transcript_name|}}}</td></tr>
<tr><th scope="row" align="left">Distance:</th><td>{{{distance|}}}</td></tr>
<tr><th scope="row" align="left">Num_trans:</th><td>{{{num_trans|}}}</td></tr>
<tr><th scope="row" align="left">All_trans:</th><td>{{{all_trans|}}}</td></tr>
</table>
</table>
<br/>
<br/>
Line 119: Line 134:
<br>
<br>
<br>
<br>
<span class="section_head">TSS expression</span>
{{#if:{{{gene_symbol|}}}|<span class="section_head">TSS expression</span><includeonly>{{#gene_exptable:{{{species|}}}|{{{gene_symbol}}} }}</includeonly>| }}
<includeonly>
{{#gene_exptable:{{{species|}}}|{{{gene_symbol}}}
}}</includeonly>
<html>
<html>
<script type="text/javascript">
<script type="text/javascript" src="reftss_js/gene_exptable.js"></script></html>
//$(document).ready(function() {
    var orderArr;
    if($('#gene_exptable')[0].rows[1].cells.length>1){
        orderArr = [[1,'desc']];
    } else {
        orderArr = [[0,'asc']];
    }
    var oTable =  $('#gene_exptable').DataTable({
                dom: 'Bfrti',
scrollY: "300px",
scrollCollapse: true,
order: orderArr,
                paging: false,
buttons: ['copyHtml5', 'excelHtml5', 'csvHtml5', 'pdfHtml5'],
columnDefs: [{ orderSequence: [ "asc", "desc" ], type: "html", targets: [ 0 ] }, { orderSequence: [ "desc", "asc" ], targets: [ "_all" ] } ]
    });
    $('#gene_exptable_wrapper .dataTables_scrollHead th').css("height", "100px").css("vertical-align", "bottom");
//});
</script></html>
{{#set:tss_id={{{tss_id}}}}}
{{#set:tss_id={{{tss_id}}}}}
{{#set:species={{{species}}}}}
{{#set:gene_name={{{gene_name|}}}}}
{{#set:distance_to_tss={{{distance_to_tss}}}}}
{{#set:entrez_id={{{entrez_id|}}}}}
{{#set:nearest_promoter_id={{{nearest_promoter_id}}}}}
{{#set:entrez_id={{{entrez_id}}}}}
{{#set:nearest_unigene={{{nearest_unigene}}}}}
{{#set:nearest_refseq={{{nearest_refseq}}}}}
{{#set:nearest_ensembl={{{nearest_ensembl}}}}}
{{#set:gene_name={{{gene_name}}}}}
{{#set:gene_alias={{{gene_alias}}}}}
{{#set:gene_description={{{gene_description}}}}}
{{#set:gene_type={{{gene_type}}}}}
{{#set:cpg_percent={{{cpg_percent}}}}}
{{#set:gc_percent={{{gc_percent}}}}}
<!-- {{#set:tata_box={{{tata_box}}}}} -->
{{#set:transcript_name={{{transcript_name}}}}}
{{#set:distance={{{distance}}}}}
{{#set:gene_id={{{gene_id}}}}}
{{#set:gene_id={{{gene_id}}}}}
{{#set:hgnc_mgi_id={{{hgnc_mgi_id}}}}}
{{#set:uniprot_id={{{uniprot_id}}}}}
{{#set:gene_name={{{gene_name}}}}}
{{#set:gene_symbol={{{gene_symbol|}}}}}
{{#set:gene_synonyms={{{gene_synonyms}}}}}
{{#set:gene_source={{{gene_source}}}}}
{{#set:chr={{{chr}}}}}
{{#set:start={{{start}}}}}
{{#set:end={{{end}}}}}
{{#set:tss_score={{{tss_score}}}}}
{{#set:strand={{{strand}}}}}
{{#set:transcript_name={{{transcript_name}}}}}
{{#set:distance={{{distance}}}}}
{{#set:num_trans={{{num_trans}}}}}
<!--{{#set:all_trans={{{all_trans}}}}} -->
{{#set:tss_classification={{{tss_classification}}}}}
[[Category:TSS_IDs]]
[[Category:TSS_IDs]]

Latest revision as of 17:42, 14 May 2024

Basic information about the TSS

TSS ID:{{{tss_id}}}
Species:
Chr:
Start:
End:
Strand:
TSS cluster detected*

  * The number of TSS cluster called studies (maximum 5)



Gene and protein annotation

Transcript_name:
Distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Gene_name:
Gene_symbol:
Gene_synonyms:
Gene_source:



TATA-Box annotation

Distance to TSS:
Nearest PromoterID:
Entrez ID:
Nearest Unigene:
Nearest Refseq:
Nearest Ensembl:
Gene Name:
Gene Alias:
Gene Description:
Gene Type:
CpG%:
GC%:
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):



Retrieved from "http://reftss.riken.jp/reftss/index.php?title=Template:TSSDetail&oldid=3155727"