TSS: Rfhg 66429.1: Difference between revisions
From referenceTSS
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |all_trans=ENST00000510659.5:0 ENST00000513967.5:0 ENST00000515409.5:0 ENST00000507818.6:0 ENST00000517780.1:0 ENST00000511208.2:0 ENST00000325366.14:0 ENST00000504464.5:0 NM_018356.3:0 NR_134298.2:0 BC032845:0 AK299156:0 AK002055:0 BC021215:0 AB527598:20 | ||
|annotation=promoter-TSS (NM_001100412) | |||
|ccre_category=PLS | |ccre_category=PLS | ||
|ccre_description=PLS,CTCF-bound (EH38D3689340,EH38E2363141) | |ccre_description=PLS,CTCF-bound (EH38D3689340,EH38E2363141) | ||
|chr=chr5 | |chr=chr5 | ||
|cpg_percent=0.095745 | |cpg_percent=0.095745 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NM_001100412) | ||
|distance=0 | |distance=0 | ||
|distance_to_tss= | |distance_to_tss=24 | ||
|end=31532372 | |end=31532372 | ||
|entrez_id= | |entrez_id=55322 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.684211 | |gc_percent=0.684211 | ||
|gene_alias= | |gene_alias=- | ||
|gene_description= | |gene_description=chromosome 5 open reading frame 22 | ||
|gene_id=55322 | |gene_id=55322 | ||
|gene_name=chromosome 5 open reading frame 22 | |gene_name=chromosome 5 open reading frame 22 | ||
| Line 19: | Line 20: | ||
|gene_symbol=C5orf22 | |gene_symbol=C5orf22 | ||
|gene_synonyms=FLJ11193 | |gene_synonyms=FLJ11193 | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:25639 | |hgnc_mgi_id=HGNC:25639 | ||
|nearest_ensembl= | |methods=CAGE{{!}}RAMPAGE{{!}}STRIPE-seq{{!}}SLIC_CAGE{{!}}C1CAGE{{!}}ReCappable-seq{{!}}oligo_capping | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000082213 | ||
|nearest_refseq= | |nearest_promoter_id=NM_018356 | ||
|nearest_unigene= | |nearest_refseq=NM_018356 | ||
|nearest_transcripts=AB527598:20 | |||
|nearest_unigene=Hs.519246 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=PRJNA401781{{!}}PRJNA597322{{!}}PRJNA615891{{!}}DRA013844{{!}}PRJDB5282{{!}}PRJNA548673 | |||
|species=human | |species=human | ||
|start= | |start=31532278 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
|transcript_name=ENST00000510659.5 ENST00000513967.5 ENST00000515409.5 ENST00000507818.6 ENST00000517780.1 ENST00000511208.2 ENST00000325366.14 ENST00000504464.5 BC032845 AK299156 AK002055 BC021215 | |transcript_name=ENST00000510659.5 ENST00000513967.5 ENST00000515409.5 ENST00000507818.6 ENST00000517780.1 ENST00000511208.2 ENST00000325366.14 ENST00000504464.5 BC032845 AK299156 AK002055 BC021215 | ||
|tss_cluster_detected= | |tss_cluster_detected=9 | ||
|tss_id=rfhg_66429.1 | |tss_id=rfhg_66429.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id=A0A024RE14 B4DR92 E5RFG1 E5RHP8 | |uniprot_id=A0A024RE14 B4DR92 E5RFG1 E5RHP8 | ||
}} | }} | ||
Latest revision as of 20:19, 15 March 2025
Basic information about the TSS
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| Source datasets | PRJNA401781|PRJNA597322|PRJNA615891|DRA013844|PRJDB5282 |PRJNA548673 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE|RAMPAGE|STRIPE-seq|SLIC_CAGE|C1CAGE|ReCappable-seq |oligo_capping | |||||||||||||
| TSS cluster detected* | 9 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D3689340,EH38E2363141) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 24 |
|---|---|
| Nearest PromoterID: | NM_018356 |
| Entrez ID: | 55322 |
| Nearest Unigene: | Hs.519246 |
| Nearest Refseq: | NM_018356 |
| Nearest Ensembl: | ENSG00000082213 |
| Gene Name: | chromosome 5 open reading frame 22 |
| Gene Alias: | - |
| Gene Type: | protein-coding |
| CpG%: | 0.095745 |
| GC%: | 0.684211 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.