TSS: Rfhg 66430.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=AB527598:0 BC021215:-61 ENST00000504464.5:-74 ENST00000325366.14:-89 NM_018356.3:-89 NR_134298.2:-89 ENST00000511208.2:-91 ENST00000515409.5:-95 ENST00000507818.6:-95 ENST00000517780.1:-95 AK002055:-98 ENST00000513967.5:-101 AK299156:-101 ENST00000510659.5:-103 BC032845:-103 | |||
|annotation=promoter-TSS (NM_001100412) | |annotation=promoter-TSS (NM_001100412) | ||
|ccre_category=N | |ccre_category=N | ||
| Line 15: | Line 16: | ||
|gene_description=chromosome 5 open reading frame 22 | |gene_description=chromosome 5 open reading frame 22 | ||
|gene_id=55322 | |gene_id=55322 | ||
|gene_name= | |gene_name=chromosome 5 open reading frame 22 | ||
|gene_source=HGNC:25639 | |gene_source=HGNC:25639 | ||
|gene_symbol=C5orf22 | |gene_symbol=C5orf22 | ||
| Line 21: | Line 22: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:25639 | |hgnc_mgi_id=HGNC:25639 | ||
|methods=NETCAGE | |||
|nearest_ensembl=ENSG00000082213 | |nearest_ensembl=ENSG00000082213 | ||
|nearest_promoter_id=NM_018356 | |nearest_promoter_id=NM_018356 | ||
|nearest_refseq=NM_018356 | |nearest_refseq=NM_018356 | ||
|nearest_transcripts=BC021215:-61 ENST00000504464.5:-74 ENST00000325366.14:-89 NM_018356.3:-89 NR_134298.2:-89 ENST00000511208.2:-91 ENST00000515409.5:-95 ENST00000507818.6:-95 ENST00000517780.1:-95 AK002055:-98 ENST00000513967.5:-101 AK299156:-101 ENST00000510659.5:-103 BC032845:-103 | |||
|nearest_unigene=Hs.519246 | |nearest_unigene=Hs.519246 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=PRJNA4843412 | |||
|species=human | |species=human | ||
|start=31532390 | |start=31532390 | ||
Latest revision as of 20:19, 15 March 2025
Basic information about the TSS
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| Source datasets | PRJNA4843412 | |||||||||||||
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| Protocol | NETCAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | - |
|---|---|
| Category: | - |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 101 |
|---|---|
| Nearest PromoterID: | NM_018356 |
| Entrez ID: | 55322 |
| Nearest Unigene: | Hs.519246 |
| Nearest Refseq: | NM_018356 |
| Nearest Ensembl: | ENSG00000082213 |
| Gene Name: | chromosome 5 open reading frame 22 |
| Gene Alias: | - |
| Gene Type: | protein-coding |
| CpG%: | 0.120000 |
| GC%: | 0.653846 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Property "Nearest transcripts" (as page type) with input value "BC021215:-61 ENST00000504464.5:-74 ENST00000325366.14:-89 NM_018356.3:-89 NR_134298.2:-89 ENST00000511208.2:-91 ENST00000515409.5:-95 ENST00000507818.6:-95 ENST00000517780.1:-95 AK002055:-98 ENST00000513967.5:-101 AK299156:-101 ENST00000510659.5:-103 BC032845:-103" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.