Usecase entrance: Difference between revisions
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=== refTSS Use-cases === | === refTSS Use-cases === | ||
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The use-case contains two categories demonstrating how to utilize refTSS in the biological research. | The use-case contains two categories demonstrating how to utilize refTSS in the biological research. | ||
===== 1. Collecting TSS information | ===== 1. Collecting TSS information ===== | ||
* [ | * [[Usecase| Surveillance of potential candidates for the promoter and proximal cis-element of the gene of interest.]] | ||
* [ | * [[Usecase| Investigating differences in expression levels between splicing variants using the FANTOM5 TSS expression table.]] | ||
===== 2. Bioinformatics analysis using refTSS ===== | ===== 2. Bioinformatics analysis using refTSS ===== | ||
* [ | * [[Usecase_differential_analysis| TSS differential analysis using refTSS]] | ||
* [ | * [[Usecase_ea| Enrichment analyses: GWAS-LD enrichment analysis and standard annotation enrichment analysis using external enrichment tools (e.g., GO annotation and KEGG pathway).]] | ||
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Latest revision as of 17:07, 15 November 2024
refTSS Use-cases
The use-case contains two categories demonstrating how to utilize refTSS in the biological research.
1. Collecting TSS information
- Surveillance of potential candidates for the promoter and proximal cis-element of the gene of interest.
- Investigating differences in expression levels between splicing variants using the FANTOM5 TSS expression table.
2. Bioinformatics analysis using refTSS
- TSS differential analysis using refTSS
- Enrichment analyses: GWAS-LD enrichment analysis and standard annotation enrichment analysis using external enrichment tools (e.g., GO annotation and KEGG pathway).