Template: TSSDetailV4: Difference between revisions

Latest revision as of 10:24, 27 March 2025

Basic information about the TSS

TSS ID:	{{{tss_id}}}
Species:
Chr:

Start:
End:
Strand:

Source datasets

Protocol

TSS cluster detected^*

* The number of TSS cluster called data-sets (maximum 5)

cCREs annotation

Description:
Category:

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:
Nearest PromoterID:
Entrez ID:
Nearest Unigene:
Nearest Refseq:
Nearest Ensembl:
Gene Name:
Gene Alias:
Gene Type:
CpG%:
GC%:
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 161: / Line 161: @@
 <table border="0" style="width:560px"><tr><td style="width:36%;">
 <table class="inner" >
-<tr><th scope="row" align="left">nearest transcript id and distance:</th><td>{{#if:{{{transcript_name|}}}|{{{transcript_name|}}}:{{{distance|}}}|}}</td></tr>
+<tr><th scope="row" align="left">Nearest transcript id and distance:</th><td>{{#if:{{{transcript_name|}}}|{{#replace:{{{transcript_name|}}}| |:{{{distance|}}}<br/>}}:{{{distance|}}}|}}</td></tr>
 <tr><th scope="row" align="left">GeneID:</th><td>{{#if:{{{gene_id|}}}|[[EntrezGene:{{{gene_id|}}}|{{{gene_id}}}]]|}}</td></tr>
 <tr><th scope="row" align="left">HGNC/MGI_ID:</th><td>{{{hgnc_mgi_id|}}}</td></tr>
 <tr><th scope="row" align="left">UniProt_ID:</th><td>{{{uniprot_id|}}}</td></tr>
-<tr><th scope="row" align="left">nearer transcript ids and distances:</th><td><div class="list-container" id="listContainer"><ul>{{#arraymap:{{{nearest_transcripts|}}}|\s|x|<li>x</li>|\s}}</ul>{{#ifexpr: {{#count:{{{nearest_transcripts|}}}|:}} > 1 |<html><span class="view-toggle" id="viewToggle" onclick="toggleList()">view more...</span></html>}}</div></td></tr>
+<tr><th scope="row" align="left">Nearer transcript ids and distances:</th><td><div class="list-container" id="listContainer"><ul>{{#arraymap:{{{nearest_transcripts|}}}|\s|x|<li>x</li>|\s}}</ul>{{#ifexpr: {{#count:{{{nearest_transcripts|}}}|:}} > 1 |<html><span class="view-toggle" id="viewToggle" onclick="toggleList()">view more...</span></html>}}</div></td></tr>
 </table></td><td style="width:4%;"></td><td style="width:60%;">
 <table class="inner" >
@@ Line 187: / Line 187: @@
 <tr><th scope="row" class="item_label_long">Gene Name:</th><td class="ttb">{{{gene_name|}}}</td></tr>
 <tr><th scope="row" class="item_label_long">Gene Alias:</th><td class="ttb">{{{gene_alias|}}}</td></tr>
-<tr><th scope="row" class="item_label_long">Gene Description:</th><td class="ttb">{{{gene_description|}}}</td></tr>
 <tr><th scope="row" class="item_label_long">Gene Type:</th><td class="ttb">{{{gene_type|}}}</td></tr>
 <tr><th scope="row" class="item_label_long">CpG%:</th><td class="ttb">{{{cpg_percent|}}}</td></tr>
@@ Line 206: / Line 205: @@
 {{#set:gene_name={{{gene_name|}}}}}
 {{#set:gene_alias={{{gene_alias|}}}}}
-{{#set:gene_description={{{gene_description|}}}}}
 {{#set:gene_type={{{gene_type|}}}}}
 {{#set:cpg_percent={{{cpg_percent|}}}}}