TSS: Hg 233277.1: Difference between revisions
From referenceTSS
No edit summary |
No edit summary |
||
| Line 1: | Line 1: | ||
{{ | {{TSSDetail | ||
|all_trans=NR_024540:-4 ENST00000488147.1:-204 | |all_trans=NR_024540:-4 ENST00000488147.1:-204 | ||
|chr=chr1 | |||
|chr= | |cpg_percent=0.02 | ||
|cpg_percent=0. | |distance= | ||
|distance= | |distance_to_tss=1419 | ||
|distance_to_tss= | |end=16020 | ||
|end= | |entrez_id=102465909 | ||
|entrez_id= | |gc_percent=0.656716 | ||
|gc_percent=0. | |gene_alias=hsa-mir-6859-2 | ||
|gene_alias= | |gene_description=microRNA 6859-2 | ||
|gene_description= | |||
|gene_id=653635 | |gene_id=653635 | ||
|gene_name= | |gene_name=MIR6859-2 | ||
|gene_source=HGNC:38034 | |gene_source=HGNC:38034 | ||
|gene_symbol=WASH7P | |gene_symbol=WASH7P | ||
|gene_synonyms=FAM39F | |gene_synonyms=FAM39F | ||
|gene_type= | |gene_type=ncRNA | ||
|hgnc_mgi_id=HGNC:38034 | |hgnc_mgi_id=HGNC:38034 | ||
|nearest_ensembl= | |nearest_ensembl=ENSG00000273874 | ||
|nearest_promoter_id= | |nearest_promoter_id=NR_107062 | ||
|nearest_refseq= | |nearest_refseq=NR_107062 | ||
|nearest_unigene= | |nearest_unigene= | ||
|num_trans=0 | |num_trans=0 | ||
|peakPage= | |||
|species=human | |||
|start=16013 | |||
|strand=- | |||
|tata_box=-93(CTGTTTTAAAAG,-,0.00),-92(TGTTTTAAAAGC,-,0.00),-91(GTTTTAAAAGCA,+,0.00) | |||
|transcript_name= | |||
|tss_classification=no | |||
|tss_id=hg_233277.1 | |tss_id=hg_233277.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id= | |uniprot_id= | ||
}} | }} | ||
Revision as of 23:57, 12 March 2018
Basic information about the TSS
|
| |||||||||||||
| TSS cluster detected* |
|---|
* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | 1419 |
|---|---|
| Nearest PromoterID: | NR_107062 |
| Entrez ID: | 102465909 |
| Nearest Unigene: | |
| Nearest Refseq: | NR_107062 |
| Nearest Ensembl: | ENSG00000273874 |
| Gene Name: | MIR6859-2 |
| Gene Alias: | hsa-mir-6859-2 |
| Gene Description: | microRNA 6859-2 |
| Gene Type: | ncRNA |
| CpG%: | 0.02 |
| GC%: | 0.656716 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -93(CTGTTTTAAAAG,-,0.00),-92(TGTTTTAAAAGC,-,0.00),-91(GTTTTAAAAGCA,+,0.00) |
TSS expression
Expression data not found.