TSS: Rfhg 66430.1: Difference between revisions

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|gene_type=protein-coding
|gene_type=protein-coding
|hgnc_mgi_id=HGNC:25639
|hgnc_mgi_id=HGNC:25639
|methods=NETCAGE
|nearest_ensembl=ENSG00000082213
|nearest_ensembl=ENSG00000082213
|nearest_promoter_id=NM_018356
|nearest_promoter_id=NM_018356
Line 27: Line 28:
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|source_datasets=PRJNA4843412
|species=human
|species=human
|start=31532390
|start=31532390

Revision as of 22:47, 8 December 2023

Basic information about the TSS

TSS ID:rfhg_66430.1
Species:human
Chr:chr5
Start:31532390
End:31532415
Strand:+
Source datasetsPRJNA4843412
ProtocolNETCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:-
Category:-

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:AB527598:0
GeneID:55322
HGNC/MGI_ID:HGNC:25639
UniProt_ID:
Nearer transcript ids and distances:
    Gene_name:C5orf22
    Gene_symbol:C5orf22
    Gene_synonyms:FLJ11193
    Gene_source:HGNC:25639



    TATA-Box annotation

    Distance to TSS:101
    Nearest PromoterID:NM_018356
    Entrez ID:55322
    Nearest Unigene:Hs.519246
    Nearest Refseq:NM_018356
    Nearest Ensembl:ENSG00000082213
    Gene Name:C5orf22
    Gene Alias:-
    Gene Type:protein-coding
    CpG%:0.120000
    GC%:0.653846
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



    TSS expression

    Expression data not found.
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