Usecase entrance: Difference between revisions
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===== 1. Collecting TSS information ===== | ===== 1. Collecting TSS information ===== | ||
* [http://rlgsw30:8081/reftss/Usecase| Surveillance of potential candidates for the promoter and proximal cis-element of the gene of interest.] | * [[Source::http://rlgsw30:8081/reftss/Usecase| Surveillance of potential candidates for the promoter and proximal cis-element of the gene of interest.]] | ||
* [http://rlgsw30:8081/reftss/Usecase| Investigating differences in expression levels between splicing variants using the FANTOM5 TSS expression table.] | * [[Source::http://rlgsw30:8081/reftss/Usecase| Investigating differences in expression levels between splicing variants using the FANTOM5 TSS expression table.]] | ||
===== 2. Bioinformatics analysis using refTSS ===== | ===== 2. Bioinformatics analysis using refTSS ===== | ||
* [http://rlgsw30:8081/reftss/Usecase_differential_analysis| TSS differential analysis tutorial.] | * [[Source::http://rlgsw30:8081/reftss/Usecase_differential_analysis| TSS differential analysis tutorial.]] | ||
* [http://rlgsw30:8081/reftss/Usecase_ea| GWAS-LD enrichment analysis.] | * [[Source::http://rlgsw30:8081/reftss/Usecase_ea| GWAS-LD enrichment analysis.]] | ||
* [http://rlgsw30:8081/reftss/Usecase_ea| Standard annotation enrichment analysis using external enrichment tools (e.g., GO annotation and KEGG pathway).] | * [[Source::http://rlgsw30:8081/reftss/Usecase_ea| Standard annotation enrichment analysis using external enrichment tools (e.g., GO annotation and KEGG pathway).]] | ||
Revision as of 10:47, 3 October 2024
refTSS Use-cases
The use-case contains two categories demonstrating how to utilize refTSS in the biological research.
1. Collecting TSS information
- Surveillance of potential candidates for the promoter and proximal cis-element of the gene of interest.
- Investigating differences in expression levels between splicing variants using the FANTOM5 TSS expression table.