TSS: Rfhg 66429.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|annotation=promoter-TSS (ENST00000325366.13)
|annotation=promoter-TSS (NM_001100412)
|ccre_category=PLS
|ccre_category=PLS
|ccre_description=PLS,CTCF-bound (EH38D3689340,EH38E2363141)
|ccre_description=PLS,CTCF-bound (EH38D3689340,EH38E2363141)
|chr=chr5
|chr=chr5
|cpg_percent=0.095745
|cpg_percent=0.095745
|detailed_annotation=protein_coding-promoter-TSS (ENST00000325366.13)
|detailed_annotation=promoter-TSS (NM_001100412)
|distance=0
|distance=0
|distance_to_tss=9
|distance_to_tss=24
|end=31532372
|end=31532372
|entrez_id=ENSG00000082213
|entrez_id=55322
|focus_ratio=NA
|focus_ratio=NA
|gc_percent=0.684211
|gc_percent=0.684211
|gene_alias=
|gene_alias=-
|gene_description=
|gene_description=chromosome 5 open reading frame 22
|gene_id=55322
|gene_id=55322
|gene_name=chromosome 5 open reading frame 22
|gene_name=C5orf22
|gene_source=HGNC:25639
|gene_source=HGNC:25639
|gene_symbol=C5orf22
|gene_symbol=C5orf22
|gene_synonyms=FLJ11193
|gene_synonyms=FLJ11193
|gene_type=protein_coding
|gene_type=protein-coding
|hgnc_mgi_id=HGNC:25639
|hgnc_mgi_id=HGNC:25639
|nearest_ensembl=
|nearest_ensembl=ENSG00000082213
|nearest_promoter_id=ENST00000504464.5
|nearest_promoter_id=NM_018356
|nearest_refseq=
|nearest_refseq=NM_018356
|nearest_unigene=ENST00000511208
|nearest_unigene=Hs.519246
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|species=human
|species=human
|start=31532277
|start=31532278
|strand=+
|strand=+
|tata_box=
|tata_box=

Revision as of 20:51, 24 June 2023

Basic information about the TSS

TSS ID:rfhg_66429.1
Species:human
Chr:chr5
Start:31532278
End:31532372
Strand:+
Source datasets
Protocol
TSS cluster detected*12

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D3689340,EH38E2363141)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000510659.5:0
ENST00000513967.5:0
ENST00000515409.5:0
ENST00000507818.6:0
ENST00000517780.1:0
ENST00000511208.2:0
ENST00000325366.14:0
ENST00000504464.5:0
BC032845:0
AK299156:0
AK002055:0
BC021215:0
GeneID:55322
HGNC/MGI_ID:HGNC:25639
UniProt_ID:A0A024RE14 B4DR92 E5RFG1 E5RHP8
Nearer transcript ids and distances:
    Gene_name:C5orf22
    Gene_symbol:C5orf22
    Gene_synonyms:FLJ11193
    Gene_source:HGNC:25639



    TATA-Box annotation

    Distance to TSS:24
    Nearest PromoterID:NM_018356
    Entrez ID:55322
    Nearest Unigene:Hs.519246
    Nearest Refseq:NM_018356
    Nearest Ensembl:ENSG00000082213
    Gene Name:C5orf22
    Gene Alias:-
    Gene Type:protein-coding
    CpG%:0.095745
    GC%:0.684211
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



    TSS expression

    Expression data not found.
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