TSS: Rfhg 179789.1: Difference between revisions

Revision as of 15:13, 7 December 2023

Basic information about the TSS

TSS ID:	rfhg_179789.1
TSS ID(Version3):	hg_155906.1
Species:	human
Chr:	chr16

Start:	2155351
End:	2155362
Strand:	-

Source datasets

Protocol

TSS cluster detected^*

13

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	-
Category:	-

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000563192.1:0
GeneID:	100507303
HGNC/MGI_ID:	HGNC:49574
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	SNHG19
Gene_symbol:	SNHG19
Gene_synonyms:	SNORD60HG
Gene_source:	HGNC:49574

TATA-Box annotation

Distance to TSS:	2
Nearest PromoterID:	NR_132114
Entrez ID:	100507303
Nearest Unigene:	Hs.369728
Nearest Refseq:	NR_132114
Nearest Ensembl:	ENSG00000260260
Gene Name:	SNHG19
Gene Alias:	SNORD60HG
Gene Type:	ncRNA
CpG%:	0.090909
GC%:	0.500000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=ncRNA
 |hgnc_mgi_id=HGNC:49574
+|methods=CAGE{{!}}TSS-seq{{!}}TIF-seq2{{!}}oligo_capping{{!}}SLIC_CAGE{{!}}ReCappable-seq{{!}}RAMPAGE{{!}}NETCAGE
 |nearest_ensembl=ENSG00000260260
 |nearest_promoter_id=NR_132114
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5{{!}}DBTSS{{!}}DRA000914{{!}}ENCODE{{!}}PRJNA615891{{!}}PRJNA401781{{!}}PRJNA548673{{!}}PRJNA4843412{{!}}DRA013844
 |species=human
 |start=2155351
@@ Line 32: / Line 34: @@
 |tata_box=
 |transcript_name=ENST00000563192.1
+|tss_cluster_detected=13
 |tss_id=rfhg_179789.1
 |tss_id_v3=hg_155906.1