TSS: Rfhg 66429.1: Difference between revisions

Revision as of 22:47, 8 December 2023

Basic information about the TSS

TSS ID:	rfhg_66429.1
Species:	human
Chr:	chr5

Start:	31532278
End:	31532372
Strand:	+

Source datasets

Protocol

TSS cluster detected^*

9

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D3689340,EH38E2363141)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000510659.5:0 ENST00000513967.5:0 ENST00000515409.5:0 ENST00000507818.6:0 ENST00000517780.1:0 ENST00000511208.2:0 ENST00000325366.14:0 ENST00000504464.5:0 BC032845:0 AK299156:0 AK002055:0 BC021215:0
GeneID:	55322
HGNC/MGI_ID:	HGNC:25639
UniProt_ID:	A0A024RE14 B4DR92 E5RFG1 E5RHP8
Nearer transcript ids and distances:

Gene_name:	C5orf22
Gene_symbol:	C5orf22
Gene_synonyms:	FLJ11193
Gene_source:	HGNC:25639

TATA-Box annotation

Distance to TSS:	24
Nearest PromoterID:	NM_018356
Entrez ID:	55322
Nearest Unigene:	Hs.519246
Nearest Refseq:	NM_018356
Nearest Ensembl:	ENSG00000082213
Gene Name:	C5orf22
Gene Alias:	-
Gene Type:	protein-coding
CpG%:	0.095745
GC%:	0.684211
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:25639
+|methods=CAGE{{!}}RAMPAGE{{!}}STRIPE-seq{{!}}SLIC_CAGE{{!}}C1CAGE{{!}}ReCappable-seq{{!}}oligo_capping
 |nearest_ensembl=ENSG00000082213
 |nearest_promoter_id=NM_018356
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=PRJNA401781{{!}}PRJNA597322{{!}}PRJNA615891{{!}}DRA013844{{!}}PRJDB5282{{!}}PRJNA548673
 |species=human
 |start=31532278
@@ Line 32: / Line 34: @@
 |tata_box=
 |transcript_name=ENST00000510659.5 ENST00000513967.5 ENST00000515409.5 ENST00000507818.6 ENST00000517780.1 ENST00000511208.2 ENST00000325366.14 ENST00000504464.5 BC032845 AK299156 AK002055 BC021215
-|tss_cluster_detected=12
+|tss_cluster_detected=9
 |tss_id=rfhg_66429.1
 |tss_score=1
 |uniprot_id=A0A024RE14 B4DR92 E5RFG1 E5RHP8
 }}