TSS: Rfhg 179789.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=ENST00000563192.1:0 NR_132114.1:0 LF210724:0 MA446301:0 LF340706:168 MA576283:168 NR_002736.1:246 | |||
|annotation=promoter-TSS (NR_132114) | |annotation=promoter-TSS (NR_132114) | ||
|ccre_category=N | |ccre_category=N | ||
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|nearest_promoter_id=NR_132114 | |nearest_promoter_id=NR_132114 | ||
|nearest_refseq=NR_132114 | |nearest_refseq=NR_132114 | ||
|nearest_transcripts=LF340706:168 MA576283:168 NR_002736.1:246 | |||
|nearest_unigene=Hs.369728 | |nearest_unigene=Hs.369728 | ||
|peak_score=1 | |peak_score=1 | ||
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|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
|transcript_name=ENST00000563192.1 | |transcript_name=ENST00000563192.1 NR_132114.1 LF210724 MA446301 | ||
|tss_cluster_detected=13 | |tss_cluster_detected=13 | ||
|tss_id=rfhg_179789.1 | |tss_id=rfhg_179789.1 | ||
Revision as of 13:03, 11 November 2024
Basic information about the TSS
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| Source datasets | FANTOM5|DBTSS|DRA000914|ENCODE|PRJNA615891|PRJNA401781 |PRJNA548673|PRJNA4843412|DRA013844 | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE|TSS-seq|TIF-seq2|oligo_capping|SLIC_CAGE |ReCappable-seq|RAMPAGE|NETCAGE | |||||||||||||||
| TSS cluster detected* | 13 | |||||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | - |
|---|---|
| Category: | - |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 2 |
|---|---|
| Nearest PromoterID: | NR_132114 |
| Entrez ID: | 100507303 |
| Nearest Unigene: | Hs.369728 |
| Nearest Refseq: | NR_132114 |
| Nearest Ensembl: | ENSG00000260260 |
| Gene Name: | SNHG19 |
| Gene Alias: | SNORD60HG |
| Gene Type: | ncRNA |
| CpG%: | 0.090909 |
| GC%: | 0.500000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.