News

2025-02-03

The refTSS website has been updated with the following updates and bug fixes.

• Added a link to display the “LD block overlapped with query TSS” table in the GWAS trait of the GWASLD enrichment analysis results.
• Fixed a bug in the TSS ID List table where the same TSS ID was split into different rows due to differences in Version 3 IDs.
• Added new Use-case page, and revised the page layout in Manual and Use-cases.
• In the TSS Detail page under Gene and protein annotation, changed “Transcript_name” and “Distance” to “Nearest transcript id and distance”, and added “Nearer transcript ids and distances.”
• Updated the UCSC Genome Browser track information to display summit information for each TSS cluster.

2024-08-09

The refTSS4 website interface and functions have been updated as follows:

• The layout of the result table in refTSS-LD has been adjusted to better fit the page.
• New download buttons (e.g., Copy, CSV, Excel, PDF) have been added to the refTSS-LD result page.
• A new copy function for TSS coordinates (e.g., “chr11:16,607,714-16,607,737”) has been added to the “Chr,” “Start,” and “End” columns.

2024-06-27

refTSS4 has been restored following hardware issues last month. Alongside hardware recovery, several specification changes have been implemented. Please note the following updates:

• The refTSS-LD service has been restored, with changes to how test results are displayed (there are no changes to the test results themselves).
• Improved speed and acceleration of TSS search functionality.
• Fixed rare error message bug affecting annotation search results.
• Corrected display issues with FANTOM5 expression tables.
• Enabled TSS search queries with multiple IDs.
• Updated the reference list on the top page.
• Revised manual documentation.
• Added the RIKEN Open Life Science Platform (OLSP) logo to the footer to support research funding.

2024-01-10

Added new property "Source datasets", "Protocol" and update the value "TSS cluster detected" on TSS detail page. Header logo image changed.

2023-09-01

Headers have been added to files that did not have headers in datafiles.

2023-08-21

Refine the manual text.

2023-08-08

Mediawiki upgraded to version 1.39

2023-05-30

open refTSS Version 4 manual and usecase webpage.