Difference between revisions of "TSS:Hg 154768.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| + | |HJMD= | ||
| + | |PCAD= | ||
|all_trans=ENST00000566808.2:-26 uc059whq.1:-26 EU832319:-285 EU832404:-285 KJ904433:-285 AB527800:-286 X63629:-336 AK225396:-353 AK312554:-360 ENST00000542274.5:-362 uc059whp.1:-362 AK296968:-362 | |all_trans=ENST00000566808.2:-26 uc059whq.1:-26 EU832319:-285 EU832404:-285 KJ904433:-285 AB527800:-286 X63629:-336 AK225396:-353 AK312554:-360 ENST00000542274.5:-362 uc059whp.1:-362 AK296968:-362 | ||
|chr=chr16 | |chr=chr16 | ||
| Line 6: | Line 8: | ||
|distance_to_tss=836 | |distance_to_tss=836 | ||
|end=68645681 | |end=68645681 | ||
| + | |end_of_center_position=68645672 | ||
|entrez_id=1001 | |entrez_id=1001 | ||
|gc_percent=0.706468 | |gc_percent=0.706468 | ||
| − | |gene_alias=CDHP | + | |gene_alias=CDHP |
|gene_description=cadherin 3 | |gene_description=cadherin 3 | ||
|gene_id=1001 | |gene_id=1001 | ||
| Line 24: | Line 27: | ||
|species=human | |species=human | ||
|start=68645662 | |start=68645662 | ||
| + | |start_of_center_position=68645671 | ||
|strand=+ | |strand=+ | ||
|transcript_name=ENST00000566808.2 uc059whq.1 | |transcript_name=ENST00000566808.2 uc059whq.1 | ||
Revision as of 20:34, 14 May 2019
Basic information about the TSS
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| Start of the center position in the TSS region: | 68645671 |
|---|---|
| End of the center position in the TSS region: | 68645672 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000566808.2 uc059whq.1 |
|---|---|
| Distance: | -26 |
| Num_trans: | 12 |
| All_trans: | ENST00000566808.2:-26 uc059whq.1:-26 EU832319:-285 EU832404:-285 KJ904433:-285 AB527800:-286 X63629:-336 AK225396:-353 AK312554:-360 ENST00000542274.5:-362 uc059whp.1:-362 AK296968:-362 |
TATA-Box annotation
| Distance to TSS: | 836 |
|---|---|
| Nearest PromoterID: | NM_001317196 |
| Entrez ID: | 1001 |
| Nearest Unigene: | Hs.191842 |
| Nearest Refseq: | NM_001793 |
| Nearest Ensembl: | ENSG00000062038 |
| Gene Name: | cadherin 15; cadherin 3 |
| Gene Alias: | CDHP |
| Gene Description: | cadherin 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.075 |
| GC%: | 0.706468 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
