Difference between revisions of "TSS:Mm 10126.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENSMUST00000177037.1:44 |chr=chr2 |cpg_percent=0.005 |distance=44 |distance_to_tss=57194 |end=3770664 |entrez_id=66540 |gc_percent=0.507463 |gene_alias=...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |AA589595= | ||
| + | |AA959793= | ||
| + | |AI132312= | ||
|all_trans=ENSMUST00000177037.1:44 | |all_trans=ENSMUST00000177037.1:44 | ||
|chr=chr2 | |chr=chr2 | ||
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|distance_to_tss=57194 | |distance_to_tss=57194 | ||
|end=3770664 | |end=3770664 | ||
| + | |end_of_center_position=3770652 | ||
|entrez_id=66540 | |entrez_id=66540 | ||
|gc_percent=0.507463 | |gc_percent=0.507463 | ||
| − | |gene_alias=3110001A13Rik | + | |gene_alias=3110001A13Rik |
|gene_description="family with sequence similarity 107, member B" | |gene_description="family with sequence similarity 107, member B" | ||
|gene_id=66540 | |gene_id=66540 | ||
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|species=mouse | |species=mouse | ||
|start=3770639 | |start=3770639 | ||
| + | |start_of_center_position=3770651 | ||
|strand=+ | |strand=+ | ||
|tata_box="-94(GTCCTTTTATGG,-,0.00),-92(CCTTTTATGGAA,+,0.00),-29(TCTTTTAGACAG,+,0.00)" | |tata_box="-94(GTCCTTTTATGG,-,0.00),-92(CCTTTTATGGAA,+,0.00),-29(TCTTTTAGACAG,+,0.00)" | ||
Revision as of 00:36, 15 May 2019
Basic information about the TSS
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| Start of the center position in the TSS region: | 3770651 |
|---|---|
| End of the center position in the TSS region: | 3770652 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENSMUST00000177037.1 |
|---|---|
| Distance: | 44 |
| Num_trans: | 1 |
| All_trans: | ENSMUST00000177037.1:44 |
TATA-Box annotation
| Distance to TSS: | 57194 |
|---|---|
| Nearest PromoterID: | NM_025626 |
| Entrez ID: | 66540 |
| Nearest Unigene: | Mm.277864 |
| Nearest Refseq: | NM_025626 |
| Nearest Ensembl: | ENSMUSG00000026655 |
| Gene Name: | "family with sequence similarity 107, member B" |
| Gene Alias: | 3110001A13Rik |
| Gene Description: | "family with sequence similarity 107, member B" |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.507463 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-94(GTCCTTTTATGG,-,0.00),-92(CCTTTTATGGAA,+,0.00),-29(TCTTTTAGACAG,+,0.00)" |
