Difference between revisions of "TSS:Mm 10127.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENSMUST00000177037.1:26 |chr=chr2 |cpg_percent=0.005 |distance=26 |distance_to_tss=57220 |end=3770682 |entrez_id=66540 |gc_percent=0.492537 |gene_alias=...") |
|||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |AA589595= | ||
| + | |AA959793= | ||
| + | |AI132312= | ||
|all_trans=ENSMUST00000177037.1:26 | |all_trans=ENSMUST00000177037.1:26 | ||
|chr=chr2 | |chr=chr2 | ||
| Line 6: | Line 9: | ||
|distance_to_tss=57220 | |distance_to_tss=57220 | ||
|end=3770682 | |end=3770682 | ||
| + | |end_of_center_position=3770678 | ||
|entrez_id=66540 | |entrez_id=66540 | ||
|gc_percent=0.492537 | |gc_percent=0.492537 | ||
| − | |gene_alias=3110001A13Rik | + | |gene_alias=3110001A13Rik |
|gene_description="family with sequence similarity 107, member B" | |gene_description="family with sequence similarity 107, member B" | ||
|gene_id=66540 | |gene_id=66540 | ||
| Line 24: | Line 28: | ||
|species=mouse | |species=mouse | ||
|start=3770673 | |start=3770673 | ||
| + | |start_of_center_position=3770677 | ||
|strand=+ | |strand=+ | ||
|tata_box="-55(TCTTTTAGACAG,+,0.00)" | |tata_box="-55(TCTTTTAGACAG,+,0.00)" | ||
Revision as of 00:36, 15 May 2019
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 3770677 |
|---|---|
| End of the center position in the TSS region: | 3770678 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000177037.1 |
|---|---|
| Distance: | 26 |
| Num_trans: | 1 |
| All_trans: | ENSMUST00000177037.1:26 |
TATA-Box annotation
| Distance to TSS: | 57220 |
|---|---|
| Nearest PromoterID: | NM_025626 |
| Entrez ID: | 66540 |
| Nearest Unigene: | Mm.277864 |
| Nearest Refseq: | NM_025626 |
| Nearest Ensembl: | ENSMUSG00000026655 |
| Gene Name: | "family with sequence similarity 107, member B" |
| Gene Alias: | 3110001A13Rik |
| Gene Description: | "family with sequence similarity 107, member B" |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.492537 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-55(TCTTTTAGACAG,+,0.00)" |
