Difference between revisions of "TSS:Mm 10144.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENSMUST00000175669.7:0 ENSMUST00000147156.8:363 uc008ieq.1:363 AK078493:363 ENSMUST00000176803.7:481 |chr=chr2 |cpg_percent=0.04 |distance=0 |distance_t...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |5330420J21= | ||
| + | |AI594879= | ||
| + | |C230040M21Rik= | ||
| + | |Frmd4= | ||
| + | |Gm13190= | ||
| + | |OTTMUSG00000010806= | ||
|all_trans=ENSMUST00000175669.7:0 ENSMUST00000147156.8:363 uc008ieq.1:363 AK078493:363 ENSMUST00000176803.7:481 | |all_trans=ENSMUST00000175669.7:0 ENSMUST00000147156.8:363 uc008ieq.1:363 AK078493:363 ENSMUST00000176803.7:481 | ||
|chr=chr2 | |chr=chr2 | ||
| Line 6: | Line 12: | ||
|distance_to_tss=-100484 | |distance_to_tss=-100484 | ||
|end=4300522 | |end=4300522 | ||
| + | |end_of_center_position=4300493 | ||
|entrez_id=209630 | |entrez_id=209630 | ||
|gc_percent=0.537313 | |gc_percent=0.537313 | ||
| − | |gene_alias=2700017I06Rik | + | |gene_alias=2700017I06Rik |
|gene_description=FERM domain containing 4A | |gene_description=FERM domain containing 4A | ||
|gene_id=209630 | |gene_id=209630 | ||
| Line 17: | Line 24: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=MGI:1919850 | |hgnc_mgi_id=MGI:1919850 | ||
| + | |mKIAA1294= | ||
|nearest_ensembl=ENSMUSG00000026657 | |nearest_ensembl=ENSMUSG00000026657 | ||
|nearest_promoter_id=NM_001177843 | |nearest_promoter_id=NM_001177843 | ||
| Line 24: | Line 32: | ||
|species=mouse | |species=mouse | ||
|start=4300462 | |start=4300462 | ||
| + | |start_of_center_position=4300492 | ||
|strand=+ | |strand=+ | ||
|tata_box="-88(GTCCTTTTAAGG,-,0.00),-87(TCCTTTTAAGGG,-,0.00),-86(CCTTTTAAGGGA,+,0.00)" | |tata_box="-88(GTCCTTTTAAGG,-,0.00),-87(TCCTTTTAAGGG,-,0.00),-86(CCTTTTAAGGGA,+,0.00)" | ||
Revision as of 00:37, 15 May 2019
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 4300492 |
|---|---|
| End of the center position in the TSS region: | 4300493 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000175669.7 |
|---|---|
| Distance: | 0 |
| Num_trans: | 5 |
| All_trans: | ENSMUST00000175669.7:0 ENSMUST00000147156.8:363 uc008ieq.1:363 AK078493:363 ENSMUST00000176803.7:481 |
TATA-Box annotation
| Distance to TSS: | -100484 |
|---|---|
| Nearest PromoterID: | NM_001177843 |
| Entrez ID: | 209630 |
| Nearest Unigene: | Mm.37932 |
| Nearest Refseq: | NM_172475 |
| Nearest Ensembl: | ENSMUSG00000026657 |
| Gene Name: | FERM domain containing 4A |
| Gene Alias: | 2700017I06Rik |
| Gene Description: | FERM domain containing 4A |
| Gene Type: | protein-coding |
| CpG%: | 0.04 |
| GC%: | 0.537313 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-88(GTCCTTTTAAGG,-,0.00),-87(TCCTTTTAAGGG,-,0.00),-86(CCTTTTAAGGGA,+,0.00)" |
