Difference between revisions of "TSS:Hg 1000.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000375415.5 | + | |all_trans=ENST00000375415.5:83 NM_001011722:83 NM_001319837:83 BC117171:93 BC143347:93 HQ258640:126 KJ899085:126 DQ139833:126 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
| Line 19: | Line 19: | ||
|hgnc_mgi_id=HGNC:25540 | |hgnc_mgi_id=HGNC:25540 | ||
|nearest_ensembl=ENSG00000074964 | |nearest_ensembl=ENSG00000074964 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001011722 |
|nearest_refseq=NM_018125 | |nearest_refseq=NM_018125 | ||
|nearest_unigene=Hs.443460 | |nearest_unigene=Hs.443460 | ||
| − | |num_trans= | + | |num_trans=8 |
|species=human | |species=human | ||
|start=17580443 | |start=17580443 | ||
|start_of_center_position=17580456 | |start_of_center_position=17580456 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000375415.5 NM_001319837 | + | |transcript_name=ENST00000375415.5 NM_001011722 NM_001319837 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_1000.1 | |tss_id=hg_1000.1 | ||
Revision as of 17:27, 11 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 17580456 |
|---|---|
| End of the center position in the TSS region: | 17580457 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000375415.5 NM_001011722 NM_001319837 |
|---|---|
| Distance: | 83 |
| Num_trans: | 8 |
| All_trans: | ENST00000375415.5:83 NM_001011722:83 NM_001319837:83 BC117171:93 BC143347:93 HQ258640:126 KJ899085:126 DQ139833:126 |
TATA-Box annotation
| Distance to TSS: | -96 |
|---|---|
| Nearest PromoterID: | NM_001011722 |
| Entrez ID: | 55160 |
| Nearest Unigene: | Hs.443460 |
| Nearest Refseq: | NM_018125 |
| Nearest Ensembl: | ENSG00000074964 |
| Gene Name: | Rho guanine nucleotide exchange factor 10 like |
| Gene Alias: | GrinchGEF |
| Gene Description: | Rho guanine nucleotide exchange factor 10 like |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.532338 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
