Difference between revisions of "TSS:Hg 100007.1"
From referenceTSS
| Line 7: | Line 7: | ||
|NFIB2= | |NFIB2= | ||
|NFIB3= | |NFIB3= | ||
| − | |all_trans=ENST00000606230. | + | |all_trans=ENST00000606230.2:-28 NM_001369472:-77 NM_001369470:-77 NM_001369460:-77 NM_001369478:-77 NM_001369463:-77 NM_001369473:-77 NM_001369466:-77 NR_161383:-77 ENST00000646622.1:237 ENST00000636432.1:296 ENST00000635877.1:349 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.05 | |cpg_percent=0.05 | ||
|distance=-28 | |distance=-28 | ||
| − | |distance_to_tss= | + | |distance_to_tss=84 |
|end=14322310 | |end=14322310 | ||
|end_of_center_position=14322304 | |end_of_center_position=14322304 | ||
|entrez_id=4781 | |entrez_id=4781 | ||
|gc_percent=0.562189 | |gc_percent=0.562189 | ||
| − | |gene_alias=CTF | + | |gene_alias=CTF|HMGIC/NFIB|MACID|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3 |
|gene_description=nuclear factor I B | |gene_description=nuclear factor I B | ||
|gene_id=4781 | |gene_id=4781 | ||
| − | |gene_name=nuclear factor I | + | |gene_name=nuclear factor I B |
|gene_source=HGNC:7785 | |gene_source=HGNC:7785 | ||
|gene_symbol=NFIB | |gene_symbol=NFIB | ||
| Line 26: | Line 26: | ||
|hgnc_mgi_id=HGNC:7785 | |hgnc_mgi_id=HGNC:7785 | ||
|nearest_ensembl=ENSG00000147862 | |nearest_ensembl=ENSG00000147862 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001369463 |
|nearest_refseq=NM_005596 | |nearest_refseq=NM_005596 | ||
|nearest_unigene=Hs.644095 | |nearest_unigene=Hs.644095 | ||
| − | |num_trans= | + | |num_trans=12 |
|species=human | |species=human | ||
|start=14322296 | |start=14322296 | ||
|start_of_center_position=14322303 | |start_of_center_position=14322303 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000606230. | + | |transcript_name=ENST00000606230.2 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_100007.1 | |tss_id=hg_100007.1 | ||
Revision as of 17:27, 11 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 14322303 |
|---|---|
| End of the center position in the TSS region: | 14322304 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000606230.2 |
|---|---|
| Distance: | -28 |
| Num_trans: | 12 |
| All_trans: | ENST00000606230.2:-28 NM_001369472:-77 NM_001369470:-77 NM_001369460:-77 NM_001369478:-77 NM_001369463:-77 NM_001369473:-77 NM_001369466:-77 NR_161383:-77 ENST00000646622.1:237 ENST00000636432.1:296 ENST00000635877.1:349 |
TATA-Box annotation
| Distance to TSS: | 84 |
|---|---|
| Nearest PromoterID: | NM_001369463 |
| Entrez ID: | 4781 |
| Nearest Unigene: | Hs.644095 |
| Nearest Refseq: | NM_005596 |
| Nearest Ensembl: | ENSG00000147862 |
| Gene Name: | nuclear factor I B |
| Gene Alias: | CTF |
| Gene Description: | nuclear factor I B |
| Gene Type: | protein-coding |
| CpG%: | 0.05 |
| GC%: | 0.562189 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
