Difference between revisions of "TSS:Hg 100047.1"
From referenceTSS
| Line 6: | Line 6: | ||
|TILRR= | |TILRR= | ||
|TRIGNO2= | |TRIGNO2= | ||
| − | |all_trans=ENST00000380880. | + | |all_trans=ENST00000380880.4:-218 NM_001379081:-218 NR_163239:-218 NM_001370065:-218 NM_001370063:-218 NM_001370060:-218 NR_163241:-218 NR_163240:-218 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| − | |distance=- | + | |distance=-218 |
| − | |distance_to_tss= | + | |distance_to_tss=225 |
|end=14910210 | |end=14910210 | ||
|end_of_center_position=14910203 | |end_of_center_position=14910203 | ||
|entrez_id=158326 | |entrez_id=158326 | ||
|gc_percent=0.487562 | |gc_percent=0.487562 | ||
| − | |gene_alias=BNAR | + | |gene_alias=BNAR|C9orf143|C9orf145|C9orf154|MOTA|TILRR|TRIGNO2 |
|gene_description=FRAS1 related extracellular matrix 1 | |gene_description=FRAS1 related extracellular matrix 1 | ||
|gene_id=158326 | |gene_id=158326 | ||
| Line 25: | Line 25: | ||
|hgnc_mgi_id=HGNC:23399 | |hgnc_mgi_id=HGNC:23399 | ||
|nearest_ensembl=ENSG00000164946 | |nearest_ensembl=ENSG00000164946 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_163239 |
|nearest_refseq=NM_144966 | |nearest_refseq=NM_144966 | ||
|nearest_unigene=Hs.50850 | |nearest_unigene=Hs.50850 | ||
| − | |num_trans= | + | |num_trans=8 |
|species=human | |species=human | ||
|start=14910195 | |start=14910195 | ||
|start_of_center_position=14910202 | |start_of_center_position=14910202 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000380880. | + | |transcript_name=ENST00000380880.4 NM_001379081 NR_163239 NM_001370065 NM_001370063 NM_001370060 NR_163241 NR_163240 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_100047.1 | |tss_id=hg_100047.1 | ||
Revision as of 17:28, 11 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 14910202 |
|---|---|
| End of the center position in the TSS region: | 14910203 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000380880.4 NM_001379081 NR_163239 NM_001370065 NM_001370063 NM_001370060 NR_163241 NR_163240 |
|---|---|
| Distance: | -218 |
| Num_trans: | 8 |
| All_trans: | ENST00000380880.4:-218 NM_001379081:-218 NR_163239:-218 NM_001370065:-218 NM_001370063:-218 NM_001370060:-218 NR_163241:-218 NR_163240:-218 |
TATA-Box annotation
| Distance to TSS: | 225 |
|---|---|
| Nearest PromoterID: | NR_163239 |
| Entrez ID: | 158326 |
| Nearest Unigene: | Hs.50850 |
| Nearest Refseq: | NM_144966 |
| Nearest Ensembl: | ENSG00000164946 |
| Gene Name: | FRAS1 related extracellular matrix 1 |
| Gene Alias: | BNAR |
| Gene Description: | FRAS1 related extracellular matrix 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.487562 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
