Difference between revisions of "TSS:Hg 100071.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=KJ905020:21 ENST00000506891 | + | |all_trans=KJ905020:21 ENST00000506891.1:-56 BC070139:-56 AK301185:-58 AK298581:-62 AK091187:-93 LF206507:-163 MA442084:-163 LF355433:-172 MA591010:-172 AK298998:-179 BC142985:-183 ENST00000512701.6:-207 ENST00000380850.8:-207 ENST00000297615.9:-207 ENST00000505732.5:-207 NM_001168340:-207 NM_001168339:-207 NM_001168341:-207 NM_152574:-207 AK310482:-207 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.08 | |cpg_percent=0.08 | ||
| Line 6: | Line 6: | ||
|distance_to_tss=211 | |distance_to_tss=211 | ||
|end=15307153 | |end=15307153 | ||
| + | |end_of_center_position=15307150 | ||
|entrez_id=158219 | |entrez_id=158219 | ||
|gc_percent=0.666667 | |gc_percent=0.666667 | ||
| Line 13: | Line 14: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|nearest_ensembl=ENSG00000155158 | |nearest_ensembl=ENSG00000155158 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_152574 |
|nearest_refseq=NM_152574 | |nearest_refseq=NM_152574 | ||
|nearest_unigene=Hs.563630 | |nearest_unigene=Hs.563630 | ||
| − | |num_trans= | + | |num_trans=21 |
|species=human | |species=human | ||
|start=15307145 | |start=15307145 | ||
| + | |start_of_center_position=15307149 | ||
|strand=- | |strand=- | ||
|transcript_name=KJ905020 | |transcript_name=KJ905020 | ||
Latest revision as of 17:29, 11 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 15307149 |
|---|---|
| End of the center position in the TSS region: | 15307150 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | KJ905020 |
|---|---|
| Distance: | 21 |
| Num_trans: | 21 |
| All_trans: | KJ905020:21 ENST00000506891.1:-56 BC070139:-56 AK301185:-58 AK298581:-62 AK091187:-93 LF206507:-163 MA442084:-163 LF355433:-172 MA591010:-172 AK298998:-179 BC142985:-183 ENST00000512701.6:-207 ENST00000380850.8:-207 ENST00000297615.9:-207 ENST00000505732.5:-207 NM_001168340:-207 NM_001168339:-207 NM_001168341:-207 NM_152574:-207 AK310482:-207 |
TATA-Box annotation
| Distance to TSS: | 211 |
|---|---|
| Nearest PromoterID: | NM_152574 |
| Entrez ID: | 158219 |
| Nearest Unigene: | Hs.563630 |
| Nearest Refseq: | NM_152574 |
| Nearest Ensembl: | ENSG00000155158 |
| Gene Name: | TTC39B |
| Gene Alias: | C9orf52 |
| Gene Description: | tetratricopeptide repeat domain 39B |
| Gene Type: | protein-coding |
| CpG%: | 0.08 |
| GC%: | 0.666667 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
