Difference between revisions of "TSS:Hg 100072.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000506891 | + | |all_trans=ENST00000506891.1:-10 BC070139:-10 AK301185:-12 AK298581:-16 AK091187:-47 KJ905020:59 LF206507:-117 MA442084:-117 LF355433:-126 MA591010:-126 AK298998:-133 BC142985:-137 ENST00000512701.6:-161 ENST00000380850.8:-161 ENST00000297615.9:-161 ENST00000505732.5:-161 NM_001168340:-161 NM_001168339:-161 NM_001168341:-161 NM_152574:-161 AK310482:-161 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.07 | |cpg_percent=0.07 | ||
| Line 19: | Line 19: | ||
|hgnc_mgi_id=HGNC:23704 | |hgnc_mgi_id=HGNC:23704 | ||
|nearest_ensembl=ENSG00000155158 | |nearest_ensembl=ENSG00000155158 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_152574 |
|nearest_refseq=NM_152574 | |nearest_refseq=NM_152574 | ||
|nearest_unigene=Hs.563630 | |nearest_unigene=Hs.563630 | ||
| − | |num_trans= | + | |num_trans=21 |
|species=human | |species=human | ||
|start=15307183 | |start=15307183 | ||
|start_of_center_position=15307191 | |start_of_center_position=15307191 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000506891 | + | |transcript_name=ENST00000506891.1 BC070139 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_100072.1 | |tss_id=hg_100072.1 | ||
Revision as of 17:29, 11 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 15307191 |
|---|---|
| End of the center position in the TSS region: | 15307192 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000506891.1 BC070139 |
|---|---|
| Distance: | -10 |
| Num_trans: | 21 |
| All_trans: | ENST00000506891.1:-10 BC070139:-10 AK301185:-12 AK298581:-16 AK091187:-47 KJ905020:59 LF206507:-117 MA442084:-117 LF355433:-126 MA591010:-126 AK298998:-133 BC142985:-137 ENST00000512701.6:-161 ENST00000380850.8:-161 ENST00000297615.9:-161 ENST00000505732.5:-161 NM_001168340:-161 NM_001168339:-161 NM_001168341:-161 NM_152574:-161 AK310482:-161 |
TATA-Box annotation
| Distance to TSS: | 169 |
|---|---|
| Nearest PromoterID: | NM_152574 |
| Entrez ID: | 158219 |
| Nearest Unigene: | Hs.563630 |
| Nearest Refseq: | NM_152574 |
| Nearest Ensembl: | ENSG00000155158 |
| Gene Name: | tetratricopeptide repeat domain 39B |
| Gene Alias: | C9orf52 |
| Gene Description: | tetratricopeptide repeat domain 39B |
| Gene Type: | protein-coding |
| CpG%: | 0.07 |
| GC%: | 0.661692 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
