Difference between revisions of "TSS:Hg 100085.1"
From referenceTSS
| Line 3: | Line 3: | ||
|PAIP= | |PAIP= | ||
|PSIP2= | |PSIP2= | ||
| − | |all_trans=AF432220:0 BC064135:0 BC013160:0 BC040032:4 AF063020:-6 ENST00000463712.6 | + | |all_trans=ENST00000380733.9:0 NM_033222:0 NM_001317900:0 NM_001317898:0 AF432220:0 BC064135:0 BC013160:0 BC040032:4 AF063020:-6 ENST00000463712.6:9 BC022971:-9 ENST00000484265.1:-11 BC033817:-11 ENST00000380715.5:-13 ENST00000488797.1:-13 BC044568:-13 ENST00000380716.8:-16 ENST00000380738.8:-17 LF383877:-27 MA619454:-27 NM_001128217:-41 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.145 | |cpg_percent=0.145 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=4 |
|end=15510978 | |end=15510978 | ||
|end_of_center_position=15510967 | |end_of_center_position=15510967 | ||
|entrez_id=11168 | |entrez_id=11168 | ||
|gc_percent=0.721393 | |gc_percent=0.721393 | ||
| − | |gene_alias=DFS70 | + | |gene_alias=DFS70|LEDGF|PAIP|PSIP2|p52|p75 |
|gene_description=PC4 and SFRS1 interacting protein 1 | |gene_description=PC4 and SFRS1 interacting protein 1 | ||
|gene_id=11168 | |gene_id=11168 | ||
| Line 18: | Line 18: | ||
|gene_source=HGNC:9527 | |gene_source=HGNC:9527 | ||
|gene_symbol=PSIP1 | |gene_symbol=PSIP1 | ||
| − | |gene_synonyms=LEDGF p52 p75 | + | |gene_synonyms=DFS70 LEDGF p52 p75 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:9527 | |hgnc_mgi_id=HGNC:9527 | ||
|nearest_ensembl=ENSG00000164985 | |nearest_ensembl=ENSG00000164985 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_033222 |
|nearest_refseq=NM_021144 | |nearest_refseq=NM_021144 | ||
|nearest_unigene=Hs.658434 | |nearest_unigene=Hs.658434 | ||
| − | |num_trans= | + | |num_trans=21 |
|p52= | |p52= | ||
|p75= | |p75= | ||
| Line 32: | Line 32: | ||
|start_of_center_position=15510966 | |start_of_center_position=15510966 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=AF432220 BC064135 BC013160 | + | |transcript_name=ENST00000380733.9 NM_033222 NM_001317900 NM_001317898 AF432220 BC064135 BC013160 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_100085.1 | |tss_id=hg_100085.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=O75475 |
}} | }} | ||
Revision as of 17:29, 11 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 15510966 |
|---|---|
| End of the center position in the TSS region: | 15510967 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000380733.9 NM_033222 NM_001317900 NM_001317898 AF432220 BC064135 BC013160 |
|---|---|
| Distance: | 0 |
| Num_trans: | 21 |
| All_trans: | ENST00000380733.9:0 NM_033222:0 NM_001317900:0 NM_001317898:0 AF432220:0 BC064135:0 BC013160:0 BC040032:4 AF063020:-6 ENST00000463712.6:9 BC022971:-9 ENST00000484265.1:-11 BC033817:-11 ENST00000380715.5:-13 ENST00000488797.1:-13 BC044568:-13 ENST00000380716.8:-16 ENST00000380738.8:-17 LF383877:-27 MA619454:-27 NM_001128217:-41 |
TATA-Box annotation
| Distance to TSS: | 4 |
|---|---|
| Nearest PromoterID: | NM_033222 |
| Entrez ID: | 11168 |
| Nearest Unigene: | Hs.658434 |
| Nearest Refseq: | NM_021144 |
| Nearest Ensembl: | ENSG00000164985 |
| Gene Name: | PC4 and SFRS1 interacting protein 1 |
| Gene Alias: | DFS70 |
| Gene Description: | PC4 and SFRS1 interacting protein 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.145 |
| GC%: | 0.721393 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
