Difference between revisions of "TSS:Hg 100090.1"
From referenceTSS
| Line 4: | Line 4: | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
| − | |distance= | + | |distance=NA |
| − | |distance_to_tss= | + | |distance_to_tss=133243 |
|end=15697224 | |end=15697224 | ||
|end_of_center_position=15697221 | |end_of_center_position=15697221 | ||
|entrez_id=203238 | |entrez_id=203238 | ||
|gc_percent=0.447761 | |gc_percent=0.447761 | ||
| − | |gene_alias=C9orf93 | + | |gene_alias=C9orf93|bA536D16.1|bA778P13.1 |
|gene_description=coiled-coil domain containing 171 | |gene_description=coiled-coil domain containing 171 | ||
|gene_name=CCDC171 | |gene_name=CCDC171 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|nearest_ensembl=ENSG00000164989 | |nearest_ensembl=ENSG00000164989 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001355547 |
|nearest_refseq=NM_173550 | |nearest_refseq=NM_173550 | ||
|nearest_unigene=Hs.17267 | |nearest_unigene=Hs.17267 | ||
| Line 23: | Line 23: | ||
|start_of_center_position=15697220 | |start_of_center_position=15697220 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-88(TAGCTTAAAAGG,-,0.00),-86(GCTTAAAAGGTC,+,0.00) |
|transcript_name= | |transcript_name= | ||
|tss_classification=no | |tss_classification=no | ||
Revision as of 17:29, 11 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 15697220 |
|---|---|
| End of the center position in the TSS region: | 15697221 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | NA |
| Num_trans: | 0 |
| All_trans: |
TATA-Box annotation
| Distance to TSS: | 133243 |
|---|---|
| Nearest PromoterID: | NM_001355547 |
| Entrez ID: | 203238 |
| Nearest Unigene: | Hs.17267 |
| Nearest Refseq: | NM_173550 |
| Nearest Ensembl: | ENSG00000164989 |
| Gene Name: | CCDC171 |
| Gene Alias: | C9orf93 |
| Gene Description: | coiled-coil domain containing 171 |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.447761 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -88(TAGCTTAAAAGG,-,0.00),-86(GCTTAAAAGGTC,+,0.00) |
