Difference between revisions of "TSS:Hg 100126.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=AK131398:0 DQ884938:0 DQ884939:0 DQ884940:0 DQ884941:0 | + | |all_trans=ENST00000380672.9:0 NM_001317939:0 NM_017637:0 NM_001317940:0 AK131398:0 DQ884938:0 DQ884939:0 DQ884940:0 DQ884941:0 ENST00000380667.6:-54 ENST00000545497.5:-70 CR933649:-70 AK299073:-81 ENST00000484726.5:-83 LF206511:-88 MA442088:-88 ENST00000486514.5:-166 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.075 | |cpg_percent=0.075 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=1 |
|end=16870677 | |end=16870677 | ||
|end_of_center_position=16870670 | |end_of_center_position=16870670 | ||
| Line 19: | Line 19: | ||
|hgnc_mgi_id=HGNC:30988 | |hgnc_mgi_id=HGNC:30988 | ||
|nearest_ensembl=ENSG00000173068 | |nearest_ensembl=ENSG00000173068 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001317939 |
|nearest_refseq=NM_017637 | |nearest_refseq=NM_017637 | ||
|nearest_unigene=Hs.656581 | |nearest_unigene=Hs.656581 | ||
| − | |num_trans= | + | |num_trans=17 |
|species=human | |species=human | ||
|start=16870661 | |start=16870661 | ||
|start_of_center_position=16870669 | |start_of_center_position=16870669 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=AK131398 DQ884938 DQ884939 DQ884940 DQ884941 | + | |transcript_name=ENST00000380672.9 NM_001317939 NM_017637 NM_001317940 AK131398 DQ884938 DQ884939 DQ884940 DQ884941 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_100126.1 | |tss_id=hg_100126.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=Q06HC1 Q06HC3 Q06HC4 | + | |uniprot_id=B4DR27 Q06HC1 Q06HC2 Q06HC3 Q06HC4 Q5H9S4 Q6ZN30 |
}} | }} | ||
Revision as of 17:30, 11 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 16870669 |
|---|---|
| End of the center position in the TSS region: | 16870670 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000380672.9 NM_001317939 NM_017637 NM_001317940 AK131398 DQ884938 DQ884939 DQ884940 DQ884941 |
|---|---|
| Distance: | 0 |
| Num_trans: | 17 |
| All_trans: | ENST00000380672.9:0 NM_001317939:0 NM_017637:0 NM_001317940:0 AK131398:0 DQ884938:0 DQ884939:0 DQ884940:0 DQ884941:0 ENST00000380667.6:-54 ENST00000545497.5:-70 CR933649:-70 AK299073:-81 ENST00000484726.5:-83 LF206511:-88 MA442088:-88 ENST00000486514.5:-166 |
TATA-Box annotation
| Distance to TSS: | 1 |
|---|---|
| Nearest PromoterID: | NM_001317939 |
| Entrez ID: | 54796 |
| Nearest Unigene: | Hs.656581 |
| Nearest Refseq: | NM_017637 |
| Nearest Ensembl: | ENSG00000173068 |
| Gene Name: | basonuclin 2 |
| Gene Alias: | BSN2 |
| Gene Description: | basonuclin 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.075 |
| GC%: | 0.641791 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
