Difference between revisions of "TSS:Hg 100146.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|FAM154A= | |FAM154A= | ||
| − | |all_trans=ENST00000542071.2:-55 NM_001287049:-55 | + | |all_trans=ENST00000542071.2:-55 NM_001287049:-55 ENST00000649457.1:-59 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.085 | |cpg_percent=0.085 | ||
| Line 10: | Line 10: | ||
|entrez_id=158297 | |entrez_id=158297 | ||
|gc_percent=0.61194 | |gc_percent=0.61194 | ||
| − | |gene_alias=C9orf138 | + | |gene_alias=C9orf138|FAM154A |
|gene_description=stabilizer of axonemal microtubules 1 | |gene_description=stabilizer of axonemal microtubules 1 | ||
|gene_id=158297 | |gene_id=158297 | ||
| Line 28: | Line 28: | ||
|start_of_center_position=19049292 | |start_of_center_position=19049292 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-35(GCCTTGAAAAGC,-,0.00) |
| − | |transcript_name=ENST00000542071.2 NM_001287049 | + | |transcript_name=ENST00000542071.2 NM_001287049 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_100146.1 | |tss_id=hg_100146.1 | ||
Revision as of 17:31, 11 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 19049292 |
|---|---|
| End of the center position in the TSS region: | 19049293 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000542071.2 NM_001287049 |
|---|---|
| Distance: | -55 |
| Num_trans: | 3 |
| All_trans: | ENST00000542071.2:-55 NM_001287049:-55 ENST00000649457.1:-59 |
TATA-Box annotation
| Distance to TSS: | 61 |
|---|---|
| Nearest PromoterID: | NM_001287049 |
| Entrez ID: | 158297 |
| Nearest Unigene: | Hs.731593 |
| Nearest Refseq: | NM_153707 |
| Nearest Ensembl: | ENSG00000155875 |
| Gene Name: | stabilizer of axonemal microtubules 1 |
| Gene Alias: | C9orf138 |
| Gene Description: | stabilizer of axonemal microtubules 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.085 |
| GC%: | 0.61194 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -35(GCCTTGAAAAGC,-,0.00) |
