Difference between revisions of "TSS:Hg 100202.1"
From referenceTSS
| Line 3: | Line 3: | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.065 | |cpg_percent=0.065 | ||
| − | |distance= | + | |distance=NA |
| − | |distance_to_tss=- | + | |distance_to_tss=-1177 |
|end=20623695 | |end=20623695 | ||
|end_of_center_position=20623677 | |end_of_center_position=20623677 | ||
|entrez_id=4300 | |entrez_id=4300 | ||
|gc_percent=0.447761 | |gc_percent=0.447761 | ||
| − | |gene_alias=AF9 | + | |gene_alias=AF9|YEATS3 |
| − | |gene_description= | + | |gene_description=MLLT3 super elongation complex subunit |
|gene_name=MLLT3 | |gene_name=MLLT3 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| Line 22: | Line 22: | ||
|start_of_center_position=20623676 | |start_of_center_position=20623676 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-27(TCCTTTTTAAAG,-,0.00),-26(CCTTTTTAAAGG,-,0.00),-25(CTTTTTAAAGGT,+,0.00) |
|transcript_name= | |transcript_name= | ||
|tss_classification=yes | |tss_classification=yes | ||
Revision as of 14:19, 14 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 20623676 |
|---|---|
| End of the center position in the TSS region: | 20623677 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | NA |
| Num_trans: | 0 |
| All_trans: |
TATA-Box annotation
| Distance to TSS: | -1177 |
|---|---|
| Nearest PromoterID: | NM_004529 |
| Entrez ID: | 4300 |
| Nearest Unigene: | Hs.317248 |
| Nearest Refseq: | NM_004529 |
| Nearest Ensembl: | ENSG00000171843 |
| Gene Name: | MLLT3 |
| Gene Alias: | AF9 |
| Gene Description: | MLLT3 super elongation complex subunit |
| Gene Type: | protein-coding |
| CpG%: | 0.065 |
| GC%: | 0.447761 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -27(TCCTTTTTAAAG,-,0.00),-26(CCTTTTTAAAGG,-,0.00),-25(CTTTTTAAAGGT,+,0.00) |
