Difference between revisions of "TSS:Hg 100265.1"
From referenceTSS
| Line 17: | Line 17: | ||
|P19ARF= | |P19ARF= | ||
|TP16= | |TP16= | ||
| − | |all_trans= | + | |all_trans=KC806059:108 U38945:108 S78535:127 AB464504:145 ENST00000530628.2:188 ENST00000579755.2:207 NM_058195:207 BC015960:218 BC021998:218 ENST00000470819.2:-234 U26727:241 BT007020:268 AJ844636:279 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.105 | |cpg_percent=0.105 | ||
| − | |distance= | + | |distance=108 |
|distance_to_tss=-128 | |distance_to_tss=-128 | ||
|end=21994639 | |end=21994639 | ||
| Line 26: | Line 26: | ||
|entrez_id=1029 | |entrez_id=1029 | ||
|gc_percent=0.746269 | |gc_percent=0.746269 | ||
| − | |gene_alias=ARF | + | |gene_alias=ARF|CDK4I|CDKN2|CMM2|INK4|INK4A|MLM|MTS-1|MTS1|P14|P14ARF|P16|P16-INK4A|P16INK4|P16INK4A|P19|P19ARF|TP16 |
|gene_description=cyclin dependent kinase inhibitor 2A | |gene_description=cyclin dependent kinase inhibitor 2A | ||
|gene_id=1029 | |gene_id=1029 | ||
| − | |gene_name=cyclin | + | |gene_name=cyclin dependent kinase inhibitor 2A |
|gene_source=HGNC:1787 | |gene_source=HGNC:1787 | ||
|gene_symbol=CDKN2A | |gene_symbol=CDKN2A | ||
| Line 39: | Line 39: | ||
|nearest_refseq=NM_000077 | |nearest_refseq=NM_000077 | ||
|nearest_unigene=Hs.512599 | |nearest_unigene=Hs.512599 | ||
| − | |num_trans= | + | |num_trans=13 |
|species=human | |species=human | ||
|start=21994598 | |start=21994598 | ||
|start_of_center_position=21994618 | |start_of_center_position=21994618 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=KC806059 U38945 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_100265.1 | |tss_id=hg_100265.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id= |
}} | }} | ||
Revision as of 14:21, 14 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 21994618 |
|---|---|
| End of the center position in the TSS region: | 21994619 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | KC806059 U38945 |
|---|---|
| Distance: | 108 |
| Num_trans: | 13 |
| All_trans: | KC806059:108 U38945:108 S78535:127 AB464504:145 ENST00000530628.2:188 ENST00000579755.2:207 NM_058195:207 BC015960:218 BC021998:218 ENST00000470819.2:-234 U26727:241 BT007020:268 AJ844636:279 |
TATA-Box annotation
| Distance to TSS: | -128 |
|---|---|
| Nearest PromoterID: | NM_058195 |
| Entrez ID: | 1029 |
| Nearest Unigene: | Hs.512599 |
| Nearest Refseq: | NM_000077 |
| Nearest Ensembl: | ENSG00000147889 |
| Gene Name: | cyclin dependent kinase inhibitor 2A |
| Gene Alias: | ARF |
| Gene Description: | cyclin dependent kinase inhibitor 2A |
| Gene Type: | protein-coding |
| CpG%: | 0.105 |
| GC%: | 0.746269 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
