Difference between revisions of "TSS:Hg 100278.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.01 |distance_to_tss=253953 |entrez_id=101929563 |gc_percent=0.268657 |gene_alias=- |gene_description=uncharacterized LOC101929563 |gene_name=LOC1019...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |chr=chr9 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
| + | |distance=NA | ||
|distance_to_tss=253953 | |distance_to_tss=253953 | ||
| + | |end=23418449 | ||
| + | |end_of_center_position=23418447 | ||
|entrez_id=101929563 | |entrez_id=101929563 | ||
|gc_percent=0.268657 | |gc_percent=0.268657 | ||
| Line 8: | Line 12: | ||
|gene_name=LOC101929563 | |gene_name=LOC101929563 | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
| − | |nearest_ensembl= | + | |nearest_ensembl=ENSG00000283982 |
|nearest_promoter_id=NR_121602 | |nearest_promoter_id=NR_121602 | ||
|nearest_refseq=NR_121602 | |nearest_refseq=NR_121602 | ||
|nearest_unigene=Hs.533220 | |nearest_unigene=Hs.533220 | ||
| − | |tata_box= | + | |num_trans=0 |
| + | |species=human | ||
| + | |start=23418443 | ||
| + | |start_of_center_position=23418446 | ||
| + | |strand=- | ||
| + | |tata_box=87(GTCTTTTTATGG,-,0.00),89(CTTTTTATGGTA,+,0.00) | ||
| + | |transcript_name= | ||
| + | |tss_classification=no | ||
|tss_id=hg_100278.1 | |tss_id=hg_100278.1 | ||
| + | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 14:21, 14 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 23418446 |
|---|---|
| End of the center position in the TSS region: | 23418447 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | NA |
| Num_trans: | 0 |
| All_trans: |
TATA-Box annotation
| Distance to TSS: | 253953 |
|---|---|
| Nearest PromoterID: | NR_121602 |
| Entrez ID: | 101929563 |
| Nearest Unigene: | Hs.533220 |
| Nearest Refseq: | NR_121602 |
| Nearest Ensembl: | ENSG00000283982 |
| Gene Name: | LOC101929563 |
| Gene Alias: | - |
| Gene Description: | uncharacterized LOC101929563 |
| Gene Type: | ncRNA |
| CpG%: | 0.01 |
| GC%: | 0.268657 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 87(GTCTTTTTATGG,-,0.00),89(CTTTTTATGGTA,+,0.00) |
