Difference between revisions of "TSS:Hg 100296.1"
From referenceTSS
| Line 2: | Line 2: | ||
|HELN1= | |HELN1= | ||
|HUB= | |HUB= | ||
| − | |all_trans=ENST00000462649.1:12 | + | |all_trans=ENST00000462649.1:12 ENST00000397312.7:-44 NM_001351455:-44 NM_001351472:-44 NM_004432:-44 NM_001351468:-44 NM_001351467:-44 NM_001351464:-44 NM_001351463:-44 NM_001351477:-44 NM_001351457:-44 NM_001351461:-44 U12431:-107 U29943:-107 LF385423:121 MA621000:121 AB209294:121 ENST00000380117.5:-141 LF355725:333 MA591302:333 LF355724:415 MA591301:415 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
|distance=12 | |distance=12 | ||
| − | |distance_to_tss= | + | |distance_to_tss=49 |
|end=23826196 | |end=23826196 | ||
|end_of_center_position=23826191 | |end_of_center_position=23826191 | ||
|entrez_id=1993 | |entrez_id=1993 | ||
|gc_percent=0.427861 | |gc_percent=0.427861 | ||
| − | |gene_alias=HEL-N1 | + | |gene_alias=HEL-N1|HELN1|HUB |
|gene_description=ELAV like RNA binding protein 2 | |gene_description=ELAV like RNA binding protein 2 | ||
|gene_id=1993 | |gene_id=1993 | ||
| − | |gene_name=ELAV like | + | |gene_name=ELAV like RNA binding protein 2 |
|gene_source=HGNC:3313 | |gene_source=HGNC:3313 | ||
|gene_symbol=ELAVL2 | |gene_symbol=ELAVL2 | ||
| Line 21: | Line 21: | ||
|hgnc_mgi_id=HGNC:3313 | |hgnc_mgi_id=HGNC:3313 | ||
|nearest_ensembl=ENSG00000107105 | |nearest_ensembl=ENSG00000107105 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001351467 |
|nearest_refseq=NM_004432 | |nearest_refseq=NM_004432 | ||
|nearest_unigene=Hs.166109 | |nearest_unigene=Hs.166109 | ||
| − | |num_trans= | + | |num_trans=22 |
|species=human | |species=human | ||
|start=23826185 | |start=23826185 | ||
|start_of_center_position=23826190 | |start_of_center_position=23826190 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-55(CCTTTTAAGACG,+,0.00) |
| − | |transcript_name=ENST00000462649 | + | |transcript_name=ENST00000462649.1 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_100296.1 | |tss_id=hg_100296.1 | ||
Revision as of 14:22, 14 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 23826190 |
|---|---|
| End of the center position in the TSS region: | 23826191 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000462649.1 |
|---|---|
| Distance: | 12 |
| Num_trans: | 22 |
| All_trans: | ENST00000462649.1:12 ENST00000397312.7:-44 NM_001351455:-44 NM_001351472:-44 NM_004432:-44 NM_001351468:-44 NM_001351467:-44 NM_001351464:-44 NM_001351463:-44 NM_001351477:-44 NM_001351457:-44 NM_001351461:-44 U12431:-107 U29943:-107 LF385423:121 MA621000:121 AB209294:121 ENST00000380117.5:-141 LF355725:333 MA591302:333 LF355724:415 MA591301:415 |
TATA-Box annotation
| Distance to TSS: | 49 |
|---|---|
| Nearest PromoterID: | NM_001351467 |
| Entrez ID: | 1993 |
| Nearest Unigene: | Hs.166109 |
| Nearest Refseq: | NM_004432 |
| Nearest Ensembl: | ENSG00000107105 |
| Gene Name: | ELAV like RNA binding protein 2 |
| Gene Alias: | HEL-N1 |
| Gene Description: | ELAV like RNA binding protein 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.03 |
| GC%: | 0.427861 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -55(CCTTTTAAGACG,+,0.00) |
