Difference between revisions of "TSS:Hg 100297.1"
From referenceTSS
| Line 2: | Line 2: | ||
|HELN1= | |HELN1= | ||
|HUB= | |HUB= | ||
| − | |all_trans= | + | |all_trans=ENST00000397312.7:-21 NM_001351455:-21 NM_001351472:-21 NM_004432:-21 NM_001351468:-21 NM_001351467:-21 NM_001351464:-21 NM_001351463:-21 NM_001351477:-21 NM_001351457:-21 NM_001351461:-21 ENST00000462649.1:28 U12431:-84 U29943:-84 ENST00000380117.5:-118 LF385423:137 MA621000:137 AB209294:137 LF355725:349 MA591302:349 LF355724:431 MA591301:431 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.035 | |cpg_percent=0.035 | ||
| − | |distance= | + | |distance=-21 |
| − | |distance_to_tss= | + | |distance_to_tss=30 |
|end=23826219 | |end=23826219 | ||
|end_of_center_position=23826211 | |end_of_center_position=23826211 | ||
|entrez_id=1993 | |entrez_id=1993 | ||
|gc_percent=0.457711 | |gc_percent=0.457711 | ||
| − | |gene_alias=HEL-N1 | + | |gene_alias=HEL-N1|HELN1|HUB |
|gene_description=ELAV like RNA binding protein 2 | |gene_description=ELAV like RNA binding protein 2 | ||
|gene_id=1993 | |gene_id=1993 | ||
| − | |gene_name=ELAV like | + | |gene_name=ELAV like RNA binding protein 2 |
|gene_source=HGNC:3313 | |gene_source=HGNC:3313 | ||
|gene_symbol=ELAVL2 | |gene_symbol=ELAVL2 | ||
| Line 21: | Line 21: | ||
|hgnc_mgi_id=HGNC:3313 | |hgnc_mgi_id=HGNC:3313 | ||
|nearest_ensembl=ENSG00000107105 | |nearest_ensembl=ENSG00000107105 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001351467 |
|nearest_refseq=NM_004432 | |nearest_refseq=NM_004432 | ||
|nearest_unigene=Hs.166109 | |nearest_unigene=Hs.166109 | ||
| − | |num_trans= | + | |num_trans=22 |
|species=human | |species=human | ||
|start=23826201 | |start=23826201 | ||
|start_of_center_position=23826210 | |start_of_center_position=23826210 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-36(CCTTTTAAGACG,+,0.00) |
| − | |transcript_name= | + | |transcript_name=ENST00000397312.7 NM_001351455 NM_001351472 NM_004432 NM_001351468 NM_001351467 NM_001351464 NM_001351463 NM_001351477 NM_001351457 NM_001351461 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_100297.1 | |tss_id=hg_100297.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=Q12926 |
}} | }} | ||
Revision as of 14:22, 14 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 23826210 |
|---|---|
| End of the center position in the TSS region: | 23826211 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000397312.7 NM_001351455 NM_001351472 NM_004432 NM_001351468 NM_001351467 NM_001351464 NM_001351463 NM_001351477 NM_001351457 NM_001351461 |
|---|---|
| Distance: | -21 |
| Num_trans: | 22 |
| All_trans: | ENST00000397312.7:-21 NM_001351455:-21 NM_001351472:-21 NM_004432:-21 NM_001351468:-21 NM_001351467:-21 NM_001351464:-21 NM_001351463:-21 NM_001351477:-21 NM_001351457:-21 NM_001351461:-21 ENST00000462649.1:28 U12431:-84 U29943:-84 ENST00000380117.5:-118 LF385423:137 MA621000:137 AB209294:137 LF355725:349 MA591302:349 LF355724:431 MA591301:431 |
TATA-Box annotation
| Distance to TSS: | 30 |
|---|---|
| Nearest PromoterID: | NM_001351467 |
| Entrez ID: | 1993 |
| Nearest Unigene: | Hs.166109 |
| Nearest Refseq: | NM_004432 |
| Nearest Ensembl: | ENSG00000107105 |
| Gene Name: | ELAV like RNA binding protein 2 |
| Gene Alias: | HEL-N1 |
| Gene Description: | ELAV like RNA binding protein 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.035 |
| GC%: | 0.457711 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -36(CCTTTTAAGACG,+,0.00) |
