Difference between revisions of "TSS:Hg 100319.1"
From referenceTSS
| Line 3: | Line 3: | ||
|CMG-1= | |CMG-1= | ||
|CMG1= | |CMG1= | ||
| − | |all_trans=BC032551:-27 AK022761:-34 AB385043:56 EU176453:57 EU176795:57 KJ898010:58 AK001642:-59 ENST00000520884.5 | + | |all_trans=BC032551:-27 AK022761:-34 AB385043:56 EU176453:57 EU176795:57 KJ898010:58 AK001642:-59 ENST00000520884.5:-119 AK002143:-119 ENST00000523212.1:121 ENST00000397292.8:-128 NM_001031689:-128 AF145020:-147 AL133608:-349 NM_001321546:-359 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.11 | |cpg_percent=0.11 | ||
|distance=-27 | |distance=-27 | ||
| − | |distance_to_tss= | + | |distance_to_tss=119 |
|end=26947114 | |end=26947114 | ||
|end_of_center_position=26947109 | |end_of_center_position=26947109 | ||
|entrez_id=80173 | |entrez_id=80173 | ||
|gc_percent=0.721393 | |gc_percent=0.721393 | ||
| − | |gene_alias=BBS20 | + | |gene_alias=BBS20|CCDC2|CMG-1|CMG1 |
|gene_description=intraflagellar transport 74 | |gene_description=intraflagellar transport 74 | ||
|gene_id=9373 | |gene_id=9373 | ||
| Line 25: | Line 25: | ||
|nearest_refseq=NM_025103 | |nearest_refseq=NM_025103 | ||
|nearest_unigene=Hs.145402 | |nearest_unigene=Hs.145402 | ||
| − | |num_trans= | + | |num_trans=15 |
|species=human | |species=human | ||
|start=26947103 | |start=26947103 | ||
Revision as of 14:22, 14 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 26947108 |
|---|---|
| End of the center position in the TSS region: | 26947109 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | BC032551 |
|---|---|
| Distance: | -27 |
| Num_trans: | 15 |
| All_trans: | BC032551:-27 AK022761:-34 AB385043:56 EU176453:57 EU176795:57 KJ898010:58 AK001642:-59 ENST00000520884.5:-119 AK002143:-119 ENST00000523212.1:121 ENST00000397292.8:-128 NM_001031689:-128 AF145020:-147 AL133608:-349 NM_001321546:-359 |
TATA-Box annotation
| Distance to TSS: | 119 |
|---|---|
| Nearest PromoterID: | NM_001099223 |
| Entrez ID: | 80173 |
| Nearest Unigene: | Hs.145402 |
| Nearest Refseq: | NM_025103 |
| Nearest Ensembl: | ENSG00000096872 |
| Gene Name: | phospholipase A2 activating protein |
| Gene Alias: | BBS20 |
| Gene Description: | intraflagellar transport 74 |
| Gene Type: | protein-coding |
| CpG%: | 0.11 |
| GC%: | 0.721393 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
