Difference between revisions of "TSS:Hg 100321.1"
From referenceTSS
| Line 3: | Line 3: | ||
|CMG-1= | |CMG-1= | ||
|CMG1= | |CMG1= | ||
| − | |all_trans=ENST00000520884.5:0 | + | |all_trans=ENST00000397292.8:0 ENST00000520884.5:0 NM_001031689:0 AF145020:0 AK002143:0 AK001642:50 AK022761:75 BC032551:82 AB385043:175 EU176453:176 EU176795:176 KJ898010:177 AL133608:-191 NM_001321546:-201 ENST00000523212.1:240 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.105 | |cpg_percent=0.105 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss=- | + | |distance_to_tss=-5 |
|end=26947272 | |end=26947272 | ||
|end_of_center_position=26947248 | |end_of_center_position=26947248 | ||
| − | |entrez_id= | + | |entrez_id=9373 |
|gc_percent=0.681592 | |gc_percent=0.681592 | ||
| − | |gene_alias= | + | |gene_alias=DOA1|NDMSBA|PLA2P|PLAP |
| − | |gene_description= | + | |gene_description=phospholipase A2 activating protein |
|gene_id=9373 | |gene_id=9373 | ||
|gene_name=phospholipase A2 activating protein | |gene_name=phospholipase A2 activating protein | ||
| Line 21: | Line 21: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:9043 | |hgnc_mgi_id=HGNC:9043 | ||
| − | |nearest_ensembl= | + | |nearest_ensembl=ENSG00000137055 |
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001031689 |
| − | |nearest_refseq= | + | |nearest_refseq=NM_004253 |
| − | |nearest_unigene=Hs. | + | |nearest_unigene=Hs.27182 |
| − | |num_trans= | + | |num_trans=15 |
|species=human | |species=human | ||
|start=26947222 | |start=26947222 | ||
|start_of_center_position=26947247 | |start_of_center_position=26947247 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000520884.5 | + | |transcript_name=ENST00000397292.8 ENST00000520884.5 NM_001031689 AF145020 AK002143 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_100321.1 | |tss_id=hg_100321.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=E5RIM3 | + | |uniprot_id=E5RIM3 Q9Y263 |
}} | }} | ||
Revision as of 14:22, 14 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 26947247 |
|---|---|
| End of the center position in the TSS region: | 26947248 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000397292.8 ENST00000520884.5 NM_001031689 AF145020 AK002143 |
|---|---|
| Distance: | 0 |
| Num_trans: | 15 |
| All_trans: | ENST00000397292.8:0 ENST00000520884.5:0 NM_001031689:0 AF145020:0 AK002143:0 AK001642:50 AK022761:75 BC032551:82 AB385043:175 EU176453:176 EU176795:176 KJ898010:177 AL133608:-191 NM_001321546:-201 ENST00000523212.1:240 |
TATA-Box annotation
| Distance to TSS: | -5 |
|---|---|
| Nearest PromoterID: | NM_001031689 |
| Entrez ID: | 9373 |
| Nearest Unigene: | Hs.27182 |
| Nearest Refseq: | NM_004253 |
| Nearest Ensembl: | ENSG00000137055 |
| Gene Name: | phospholipase A2 activating protein |
| Gene Alias: | DOA1 |
| Gene Description: | phospholipase A2 activating protein |
| Gene Type: | protein-coding |
| CpG%: | 0.105 |
| GC%: | 0.681592 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
