Difference between revisions of "TSS:Hg 100322.1"
From referenceTSS
| Line 3: | Line 3: | ||
|CMG-1= | |CMG-1= | ||
|CMG1= | |CMG1= | ||
| − | |all_trans=AF145020:27 ENST00000520884.5 | + | |all_trans=AF145020:27 ENST00000397292.8:46 NM_001031689:46 ENST00000520884.5:55 AK002143:55 AK001642:115 AK022761:140 BC032551:147 AL133608:-165 NM_001321546:-175 AB385043:240 EU176453:241 EU176795:241 KJ898010:242 ENST00000523212.1:305 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.08 | |cpg_percent=0.08 | ||
|distance=27 | |distance=27 | ||
| − | |distance_to_tss=- | + | |distance_to_tss=-7 |
|end=26947298 | |end=26947298 | ||
|end_of_center_position=26947293 | |end_of_center_position=26947293 | ||
|entrez_id=80173 | |entrez_id=80173 | ||
|gc_percent=0.666667 | |gc_percent=0.666667 | ||
| − | |gene_alias=BBS20 | + | |gene_alias=BBS20|CCDC2|CMG-1|CMG1 |
|gene_description=intraflagellar transport 74 | |gene_description=intraflagellar transport 74 | ||
|gene_id=9373 | |gene_id=9373 | ||
| Line 25: | Line 25: | ||
|nearest_refseq=NM_025103 | |nearest_refseq=NM_025103 | ||
|nearest_unigene=Hs.145402 | |nearest_unigene=Hs.145402 | ||
| − | |num_trans= | + | |num_trans=15 |
|species=human | |species=human | ||
|start=26947287 | |start=26947287 | ||
Revision as of 14:22, 14 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 26947292 |
|---|---|
| End of the center position in the TSS region: | 26947293 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | AF145020 |
|---|---|
| Distance: | 27 |
| Num_trans: | 15 |
| All_trans: | AF145020:27 ENST00000397292.8:46 NM_001031689:46 ENST00000520884.5:55 AK002143:55 AK001642:115 AK022761:140 BC032551:147 AL133608:-165 NM_001321546:-175 AB385043:240 EU176453:241 EU176795:241 KJ898010:242 ENST00000523212.1:305 |
TATA-Box annotation
| Distance to TSS: | -7 |
|---|---|
| Nearest PromoterID: | NM_001099222 |
| Entrez ID: | 80173 |
| Nearest Unigene: | Hs.145402 |
| Nearest Refseq: | NM_025103 |
| Nearest Ensembl: | ENSG00000096872 |
| Gene Name: | phospholipase A2 activating protein |
| Gene Alias: | BBS20 |
| Gene Description: | intraflagellar transport 74 |
| Gene Type: | protein-coding |
| CpG%: | 0.08 |
| GC%: | 0.666667 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
