Difference between revisions of "TSS:Hg 100360.1"
From referenceTSS
| Line 3: | Line 3: | ||
|FTDALS= | |FTDALS= | ||
|FTDALS1= | |FTDALS1= | ||
| − | |all_trans=ENST00000379995.1:-76 | + | |all_trans=ENST00000379995.1:-76 ENST00000647196.1:-140 ENST00000673600.1:160 JN681271:-165 AK057806:-165 AK291425:171 ENST00000380003.8:173 NM_018325:173 ENST00000619707.5:-187 ENST00000379997.7:-187 NM_001256054:-187 NM_145005:-187 ENST00000644136.1:197 ENST00000488117.5:206 AL832467:206 AL832229:207 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
|distance=-76 | |distance=-76 | ||
| − | |distance_to_tss=- | + | |distance_to_tss=-185 |
|end=27573679 | |end=27573679 | ||
|end_of_center_position=27573667 | |end_of_center_position=27573667 | ||
|entrez_id=203228 | |entrez_id=203228 | ||
|gc_percent=0.507463 | |gc_percent=0.507463 | ||
| − | |gene_alias=ALSFTD | + | |gene_alias=ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 |
| − | |gene_description= | + | |gene_description=C9orf72-SMCR8 complex subunit |
|gene_id=203228 | |gene_id=203228 | ||
| − | |gene_name= | + | |gene_name=C9orf72-SMCR8 complex subunit |
|gene_source=HGNC:28337 | |gene_source=HGNC:28337 | ||
|gene_symbol=C9orf72 | |gene_symbol=C9orf72 | ||
| − | |gene_synonyms=MGC23980 | + | |gene_synonyms=DENND9 DENNL72 MGC23980 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:28337 | |hgnc_mgi_id=HGNC:28337 | ||
| Line 25: | Line 25: | ||
|nearest_refseq=NM_018325 | |nearest_refseq=NM_018325 | ||
|nearest_unigene=Hs.493639 | |nearest_unigene=Hs.493639 | ||
| − | |num_trans= | + | |num_trans=16 |
|species=human | |species=human | ||
|start=27573653 | |start=27573653 | ||
|start_of_center_position=27573666 | |start_of_center_position=27573666 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000379995 | + | |transcript_name=ENST00000379995.1 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_100360.1 | |tss_id=hg_100360.1 | ||
Revision as of 15:18, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 27573666 |
|---|---|
| End of the center position in the TSS region: | 27573667 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000379995.1 |
|---|---|
| Distance: | -76 |
| Num_trans: | 16 |
| All_trans: | ENST00000379995.1:-76 ENST00000647196.1:-140 ENST00000673600.1:160 JN681271:-165 AK057806:-165 AK291425:171 ENST00000380003.8:173 NM_018325:173 ENST00000619707.5:-187 ENST00000379997.7:-187 NM_001256054:-187 NM_145005:-187 ENST00000644136.1:197 ENST00000488117.5:206 AL832467:206 AL832229:207 |
TATA-Box annotation
| Distance to TSS: | -185 |
|---|---|
| Nearest PromoterID: | NM_018325 |
| Entrez ID: | 203228 |
| Nearest Unigene: | Hs.493639 |
| Nearest Refseq: | NM_018325 |
| Nearest Ensembl: | ENSG00000147894 |
| Gene Name: | C9orf72-SMCR8 complex subunit |
| Gene Alias: | ALSFTD |
| Gene Description: | C9orf72-SMCR8 complex subunit |
| Gene Type: | protein-coding |
| CpG%: | 0.02 |
| GC%: | 0.507463 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
