Difference between revisions of "TSS:Hg 100372.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|LRRN6C= | |LRRN6C= | ||
| + | |all_trans=NM_001354574:356 NM_001258282:356 | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.05 | |cpg_percent=0.05 | ||
| − | |distance= | + | |distance=356 |
| − | |distance_to_tss=- | + | |distance_to_tss=-370 |
|end=29213985 | |end=29213985 | ||
|end_of_center_position=29213971 | |end_of_center_position=29213971 | ||
|entrez_id=158038 | |entrez_id=158038 | ||
|gc_percent=0.606965 | |gc_percent=0.606965 | ||
| − | |gene_alias=LERN3 | + | |gene_alias=LERN3|LRRN6C |
|gene_description=leucine rich repeat and Ig domain containing 2 | |gene_description=leucine rich repeat and Ig domain containing 2 | ||
| − | |gene_name=LINGO2 | + | |gene_id=158038 |
| + | |gene_name=leucine rich repeat and Ig domain containing 2 | ||
| + | |gene_source=HGNC:21207 | ||
| + | |gene_symbol=LINGO2 | ||
| + | |gene_synonyms=LERN3 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:21207 | ||
|nearest_ensembl=ENSG00000174482 | |nearest_ensembl=ENSG00000174482 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001354574 |
|nearest_refseq=NM_152570 | |nearest_refseq=NM_152570 | ||
|nearest_unigene=Hs.444665 | |nearest_unigene=Hs.444665 | ||
| − | |num_trans= | + | |num_trans=2 |
|species=human | |species=human | ||
|start=29213956 | |start=29213956 | ||
|start_of_center_position=29213970 | |start_of_center_position=29213970 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=NM_001354574 NM_001258282 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_100372.1 | |tss_id=hg_100372.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id=Q7L985 | ||
}} | }} | ||
Revision as of 15:18, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 29213970 |
|---|---|
| End of the center position in the TSS region: | 29213971 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NM_001354574 NM_001258282 |
|---|---|
| Distance: | 356 |
| Num_trans: | 2 |
| All_trans: | NM_001354574:356 NM_001258282:356 |
TATA-Box annotation
| Distance to TSS: | -370 |
|---|---|
| Nearest PromoterID: | NM_001354574 |
| Entrez ID: | 158038 |
| Nearest Unigene: | Hs.444665 |
| Nearest Refseq: | NM_152570 |
| Nearest Ensembl: | ENSG00000174482 |
| Gene Name: | leucine rich repeat and Ig domain containing 2 |
| Gene Alias: | LERN3 |
| Gene Description: | leucine rich repeat and Ig domain containing 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.05 |
| GC%: | 0.606965 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
