Difference between revisions of "TSS:Hg 100382.1"
From referenceTSS
| Line 3: | Line 3: | ||
|RLR-1= | |RLR-1= | ||
|SGMRT2= | |SGMRT2= | ||
| + | |all_trans=ENST00000681448.1:14 LF354197:320 MA589774:320 | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| − | |distance= | + | |distance=14 |
| − | |distance_to_tss= | + | |distance_to_tss=34484 |
|end=32491714 | |end=32491714 | ||
|end_of_center_position=32491713 | |end_of_center_position=32491713 | ||
|entrez_id=23586 | |entrez_id=23586 | ||
|gc_percent=0.343284 | |gc_percent=0.343284 | ||
| − | |gene_alias=RIG-I | + | |gene_alias=RIG-I|RIG1|RIGI|RLR-1|SGMRT2 |
|gene_description=DExD/H-box helicase 58 | |gene_description=DExD/H-box helicase 58 | ||
| − | |gene_name=DDX58 | + | |gene_id=23586 |
| + | |gene_name=DExD/H-box helicase 58 | ||
| + | |gene_source=HGNC:19102 | ||
| + | |gene_symbol=DDX58 | ||
| + | |gene_synonyms=DKFZp434J1111 FLJ13599 RIG-1 RIG-I RIG1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:19102 | ||
|nearest_ensembl=ENSG00000107201 | |nearest_ensembl=ENSG00000107201 | ||
|nearest_promoter_id=NM_014314 | |nearest_promoter_id=NM_014314 | ||
|nearest_refseq=NM_014314 | |nearest_refseq=NM_014314 | ||
|nearest_unigene=Hs.190622 | |nearest_unigene=Hs.190622 | ||
| − | |num_trans= | + | |num_trans=3 |
|species=human | |species=human | ||
|start=32491710 | |start=32491710 | ||
|start_of_center_position=32491712 | |start_of_center_position=32491712 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=ENST00000681448.1 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_100382.1 | |tss_id=hg_100382.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 15:18, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 32491712 |
|---|---|
| End of the center position in the TSS region: | 32491713 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000681448.1 |
|---|---|
| Distance: | 14 |
| Num_trans: | 3 |
| All_trans: | ENST00000681448.1:14 LF354197:320 MA589774:320 |
TATA-Box annotation
| Distance to TSS: | 34484 |
|---|---|
| Nearest PromoterID: | NM_014314 |
| Entrez ID: | 23586 |
| Nearest Unigene: | Hs.190622 |
| Nearest Refseq: | NM_014314 |
| Nearest Ensembl: | ENSG00000107201 |
| Gene Name: | DExD/H-box helicase 58 |
| Gene Alias: | RIG-I |
| Gene Description: | DExD/H-box helicase 58 |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.343284 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
