Difference between revisions of "TSS:Hg 100394.1"
From referenceTSS
| Line 3: | Line 3: | ||
|RP31= | |RP31= | ||
|TP53BPL= | |TP53BPL= | ||
| − | |all_trans=BC060884:0 | + | |all_trans=ENST00000681750.1:0 BC060884:0 ENST00000379858.1:2 AB045732:2 AB045733:2 AF098300:2 ENST00000360538.7:-8 NM_005802:-8 LF213878:-24 MA449455:-24 ENST00000680198.1:-25 LP895621:-25 NM_001195622:-50 LF354205:-283 MA589782:-283 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.06 | |cpg_percent=0.06 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=20 |
|end=32552578 | |end=32552578 | ||
|end_of_center_position=32552567 | |end_of_center_position=32552567 | ||
|entrez_id=10210 | |entrez_id=10210 | ||
|gc_percent=0.557214 | |gc_percent=0.557214 | ||
| − | |gene_alias=LUN | + | |gene_alias=LUN|P53BP3|RP31|TP53BPL |
|gene_description=TOP1 binding arginine/serine rich protein | |gene_description=TOP1 binding arginine/serine rich protein | ||
|gene_id=10210 | |gene_id=10210 | ||
| − | |gene_name= | + | |gene_name=TOP1 binding arginine/serine rich protein, E3 ubiquitin ligase |
|gene_source=HGNC:21653 | |gene_source=HGNC:21653 | ||
|gene_symbol=TOPORS | |gene_symbol=TOPORS | ||
| Line 22: | Line 22: | ||
|hgnc_mgi_id=HGNC:21653 | |hgnc_mgi_id=HGNC:21653 | ||
|nearest_ensembl=ENSG00000197579 | |nearest_ensembl=ENSG00000197579 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_005802 |
|nearest_refseq=NM_005802 | |nearest_refseq=NM_005802 | ||
|nearest_unigene=Hs.589962 | |nearest_unigene=Hs.589962 | ||
| − | |num_trans= | + | |num_trans=15 |
|species=human | |species=human | ||
|start=32552554 | |start=32552554 | ||
|start_of_center_position=32552566 | |start_of_center_position=32552566 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=BC060884 | + | |transcript_name=ENST00000681750.1 BC060884 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_100394.1 | |tss_id=hg_100394.1 | ||
Revision as of 15:18, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 32552566 |
|---|---|
| End of the center position in the TSS region: | 32552567 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000681750.1 BC060884 |
|---|---|
| Distance: | 0 |
| Num_trans: | 15 |
| All_trans: | ENST00000681750.1:0 BC060884:0 ENST00000379858.1:2 AB045732:2 AB045733:2 AF098300:2 ENST00000360538.7:-8 NM_005802:-8 LF213878:-24 MA449455:-24 ENST00000680198.1:-25 LP895621:-25 NM_001195622:-50 LF354205:-283 MA589782:-283 |
TATA-Box annotation
| Distance to TSS: | 20 |
|---|---|
| Nearest PromoterID: | NM_005802 |
| Entrez ID: | 10210 |
| Nearest Unigene: | Hs.589962 |
| Nearest Refseq: | NM_005802 |
| Nearest Ensembl: | ENSG00000197579 |
| Gene Name: | TOP1 binding arginine/serine rich protein, E3 ubiquitin ligase |
| Gene Alias: | LUN |
| Gene Description: | TOP1 binding arginine/serine rich protein |
| Gene Type: | protein-coding |
| CpG%: | 0.06 |
| GC%: | 0.557214 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
