Difference between revisions of "TSS:Hg 1004.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.01 |distance_to_tss=14694 |entrez_id=55160 |gc_percent=0.383085 |gene_alias=GrinchGEF |gene_description=Rho guanine nucleotide exchange factor 10 li...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |chr=chr1 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
| + | |distance=NA | ||
|distance_to_tss=14694 | |distance_to_tss=14694 | ||
| + | |end=17595248 | ||
| + | |end_of_center_position=17595247 | ||
|entrez_id=55160 | |entrez_id=55160 | ||
|gc_percent=0.383085 | |gc_percent=0.383085 | ||
| Line 9: | Line 13: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|nearest_ensembl=ENSG00000074964 | |nearest_ensembl=ENSG00000074964 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001319837 |
|nearest_refseq=NM_018125 | |nearest_refseq=NM_018125 | ||
|nearest_unigene=Hs.443460 | |nearest_unigene=Hs.443460 | ||
| − | |tata_box= | + | |num_trans=0 |
| + | |species=human | ||
| + | |start=17595245 | ||
| + | |start_of_center_position=17595246 | ||
| + | |strand=+ | ||
| + | |tata_box=-74(GTTTTTATAGAA,+,0.00),-7(TTTTTTAAAGCT,+,0.00) | ||
| + | |transcript_name= | ||
| + | |tss_classification=no | ||
|tss_id=hg_1004.1 | |tss_id=hg_1004.1 | ||
| + | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 15:18, 15 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 17595246 |
|---|---|
| End of the center position in the TSS region: | 17595247 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | NA |
| Num_trans: | 0 |
| All_trans: |
TATA-Box annotation
| Distance to TSS: | 14694 |
|---|---|
| Nearest PromoterID: | NM_001319837 |
| Entrez ID: | 55160 |
| Nearest Unigene: | Hs.443460 |
| Nearest Refseq: | NM_018125 |
| Nearest Ensembl: | ENSG00000074964 |
| Gene Name: | ARHGEF10L |
| Gene Alias: | GrinchGEF |
| Gene Description: | Rho guanine nucleotide exchange factor 10 like |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.383085 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -74(GTTTTTATAGAA,+,0.00),-7(TTTTTTAAAGCT,+,0.00) |
