Difference between revisions of "TSS:Hg 100445.1"
From referenceTSS
| Line 4: | Line 4: | ||
|GT1= | |GT1= | ||
|GTB= | |GTB= | ||
| − | |all_trans= | + | |all_trans=ENST00000535206.5:33 BC045773:33 ENST00000379731.5:53 NM_001378497:53 NM_001497:53 NM_001378496:53 M22921:153 U10474:153 D29805:156 X13223:156 X14085:156 HG765099:186 HG765101:186 AK312797:192 AK296928:203 KJ901453:220 X55415:220 AB590749:220 NM_001378495:230 AK316294:241 |
|beta4Gal-T1= | |beta4Gal-T1= | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.125 | |cpg_percent=0.125 | ||
| − | |distance= | + | |distance=33 |
|distance_to_tss=-36 | |distance_to_tss=-36 | ||
|end=33167399 | |end=33167399 | ||
| Line 14: | Line 14: | ||
|entrez_id=2683 | |entrez_id=2683 | ||
|gc_percent=0.79602 | |gc_percent=0.79602 | ||
| − | |gene_alias=B4GAL-T1 | + | |gene_alias=B4GAL-T1|CDG2D|GGTB2|GT1|GTB|beta4Gal-T1 |
| − | |gene_description= | + | |gene_description=beta-1,4-galactosyltransferase 1 |
|gene_id=2683 | |gene_id=2683 | ||
| − | |gene_name= | + | |gene_name=beta-1,4-galactosyltransferase 1 |
|gene_source=HGNC:924 | |gene_source=HGNC:924 | ||
|gene_symbol=B4GALT1 | |gene_symbol=B4GALT1 | ||
| Line 27: | Line 27: | ||
|nearest_refseq=NM_001497 | |nearest_refseq=NM_001497 | ||
|nearest_unigene=Hs.272011 | |nearest_unigene=Hs.272011 | ||
| − | |num_trans= | + | |num_trans=20 |
|species=human | |species=human | ||
|start=33167388 | |start=33167388 | ||
|start_of_center_position=33167393 | |start_of_center_position=33167393 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=ENST00000535206.5 BC045773 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_100445.1 | |tss_id=hg_100445.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=Q86XA6 |
}} | }} | ||
Revision as of 15:20, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 33167393 |
|---|---|
| End of the center position in the TSS region: | 33167394 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000535206.5 BC045773 |
|---|---|
| Distance: | 33 |
| Num_trans: | 20 |
| All_trans: | ENST00000535206.5:33 BC045773:33 ENST00000379731.5:53 NM_001378497:53 NM_001497:53 NM_001378496:53 M22921:153 U10474:153 D29805:156 X13223:156 X14085:156 HG765099:186 HG765101:186 AK312797:192 AK296928:203 KJ901453:220 X55415:220 AB590749:220 NM_001378495:230 AK316294:241 |
TATA-Box annotation
| Distance to TSS: | -36 |
|---|---|
| Nearest PromoterID: | NM_001497 |
| Entrez ID: | 2683 |
| Nearest Unigene: | Hs.272011 |
| Nearest Refseq: | NM_001497 |
| Nearest Ensembl: | ENSG00000086062 |
| Gene Name: | beta-1,4-galactosyltransferase 1 |
| Gene Alias: | B4GAL-T1 |
| Gene Description: | beta-1,4-galactosyltransferase 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.125 |
| GC%: | 0.79602 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
