Difference between revisions of "TSS:Hg 100530.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
|DCTN22= | |DCTN22= | ||
| − | |all_trans= | + | |all_trans=ENST00000259632.12:0 ENST00000341694.6:0 ENST00000477738.6:0 ENST00000378913.6:0 NM_001281426:0 NM_001281427:0 NM_007234:0 NM_024348:0 BC000319:0 BC003004:0 AF082513:0 BC107697:0 AK314730:0 ENST00000378911.3:2 AK091661:-2 AB463589:2 CR541889:2 KJ893266:2 DQ891980:2 EU176665:2 CU674154:2 ENST00000378916.8:-7 NM_001281425:-7 ENST00000421919.5:23 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.075 | |cpg_percent=0.075 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=4 |
|end=34620516 | |end=34620516 | ||
|end_of_center_position=34620491 | |end_of_center_position=34620491 | ||
|entrez_id=11258 | |entrez_id=11258 | ||
|gc_percent=0.621891 | |gc_percent=0.621891 | ||
| − | |gene_alias=DCTN-22 | + | |gene_alias=DCTN-22|DCTN22 |
|gene_description=dynactin subunit 3 | |gene_description=dynactin subunit 3 | ||
|gene_id=11258 | |gene_id=11258 | ||
| Line 20: | Line 20: | ||
|hgnc_mgi_id=HGNC:2713 | |hgnc_mgi_id=HGNC:2713 | ||
|nearest_ensembl=ENSG00000137100 | |nearest_ensembl=ENSG00000137100 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_007234 |
|nearest_refseq=NM_007234 | |nearest_refseq=NM_007234 | ||
|nearest_unigene=Hs.511768 | |nearest_unigene=Hs.511768 | ||
| − | |num_trans= | + | |num_trans=24 |
|species=human | |species=human | ||
|start=34620465 | |start=34620465 | ||
|start_of_center_position=34620490 | |start_of_center_position=34620490 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-76(CTGCATAAAGGG,-,0.00) |
| − | |transcript_name=ENST00000341694.6 | + | |transcript_name=ENST00000259632.12 ENST00000341694.6 ENST00000477738.6 ENST00000378913.6 NM_001281426 NM_001281427 NM_007234 NM_024348 BC000319 BC003004 AF082513 BC107697 AK314730 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_100530.1 | |tss_id=hg_100530.1 | ||
Revision as of 15:22, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 34620490 |
|---|---|
| End of the center position in the TSS region: | 34620491 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000259632.12 ENST00000341694.6 ENST00000477738.6 ENST00000378913.6 NM_001281426 NM_001281427 NM_007234 NM_024348 BC000319 BC003004 AF082513 BC107697 AK314730 |
|---|---|
| Distance: | 0 |
| Num_trans: | 24 |
| All_trans: | ENST00000259632.12:0 ENST00000341694.6:0 ENST00000477738.6:0 ENST00000378913.6:0 NM_001281426:0 NM_001281427:0 NM_007234:0 NM_024348:0 BC000319:0 BC003004:0 AF082513:0 BC107697:0 AK314730:0 ENST00000378911.3:2 AK091661:-2 AB463589:2 CR541889:2 KJ893266:2 DQ891980:2 EU176665:2 CU674154:2 ENST00000378916.8:-7 NM_001281425:-7 ENST00000421919.5:23 |
TATA-Box annotation
| Distance to TSS: | 4 |
|---|---|
| Nearest PromoterID: | NM_007234 |
| Entrez ID: | 11258 |
| Nearest Unigene: | Hs.511768 |
| Nearest Refseq: | NM_007234 |
| Nearest Ensembl: | ENSG00000137100 |
| Gene Name: | dynactin subunit 3 |
| Gene Alias: | DCTN-22 |
| Gene Description: | dynactin subunit 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.075 |
| GC%: | 0.621891 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -76(CTGCATAAAGGG,-,0.00) |
