Difference between revisions of "TSS:Hg 100539.1"
From referenceTSS
| Line 6: | Line 6: | ||
|SR-BP1= | |SR-BP1= | ||
|SRBP= | |SRBP= | ||
| − | |all_trans=ENST00000378892.5:0 ENST00000353468.4:0 ENST00000277010. | + | |all_trans=ENST00000378892.5:0 ENST00000353468.4:0 ENST00000277010.9:0 ENST00000679597.1:0 ENST00000680104.1:0 ENST00000680244.1:0 ENST00000680277.1:0 NM_001282205:0 NM_005866:0 BC010104:0 BC007839:0 AK222899:0 AK098451:0 U79528:0 U75283:0 BC004899:0 AK299130:0 AK291092:0 AY633611:0 BC006307:0 ENST00000461426.1:-2 ENST00000680730.1:-15 ENST00000477726.1:-15 AK130502:-15 ENST00000681409.1:-22 KJ892987:25 AF226604:25 DQ644568:25 DQ647702:25 DQ656583:25 CR457075:25 DQ892881:25 DQ896130:25 KJ906030:25 NM_001282208:-32 NM_001282209:-32 NM_001282207:-32 NM_001282206:-32 NM_147157:-32 NR_104108:-32 ENST00000497006.2:-50 ENST00000478146.1:310 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.135 | |cpg_percent=0.135 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=29 |
|end=34637794 | |end=34637794 | ||
|end_of_center_position=34637758 | |end_of_center_position=34637758 | ||
|entrez_id=10280 | |entrez_id=10280 | ||
|gc_percent=0.78607 | |gc_percent=0.78607 | ||
| − | |gene_alias=ALS16 | + | |gene_alias=ALS16|DSMA2|OPRS1|SIG-1R|SR-BP|SR-BP1|SRBP|hSigmaR1|sigma1R |
|gene_description=sigma non-opioid intracellular receptor 1 | |gene_description=sigma non-opioid intracellular receptor 1 | ||
|gene_id=10280 | |gene_id=10280 | ||
| Line 26: | Line 26: | ||
|hgnc_mgi_id=HGNC:8157 | |hgnc_mgi_id=HGNC:8157 | ||
|nearest_ensembl=ENSG00000147955 | |nearest_ensembl=ENSG00000147955 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001282205 |
|nearest_refseq=NM_005866 | |nearest_refseq=NM_005866 | ||
|nearest_unigene=Hs.522087 | |nearest_unigene=Hs.522087 | ||
| − | |num_trans= | + | |num_trans=42 |
|sigma1R= | |sigma1R= | ||
|species=human | |species=human | ||
| Line 35: | Line 35: | ||
|start_of_center_position=34637757 | |start_of_center_position=34637757 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000378892.5 ENST00000353468.4 ENST00000277010. | + | |transcript_name=ENST00000378892.5 ENST00000353468.4 ENST00000277010.9 ENST00000679597.1 ENST00000680104.1 ENST00000680244.1 ENST00000680277.1 NM_001282205 NM_005866 BC010104 BC007839 AK222899 AK098451 U79528 U75283 BC004899 AK299130 AK291092 AY633611 BC006307 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_100539.1 | |tss_id=hg_100539.1 | ||
Revision as of 15:22, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 34637757 |
|---|---|
| End of the center position in the TSS region: | 34637758 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000378892.5 ENST00000353468.4 ENST00000277010.9 ENST00000679597.1 ENST00000680104.1 ENST00000680244.1 ENST00000680277.1 NM_001282205 NM_005866 BC010104 BC007839 AK222899 AK098451 U79528 U75283 BC004899 AK299130 AK291092 AY633611 BC006307 |
|---|---|
| Distance: | 0 |
| Num_trans: | 42 |
| All_trans: | ENST00000378892.5:0 ENST00000353468.4:0 ENST00000277010.9:0 ENST00000679597.1:0 ENST00000680104.1:0 ENST00000680244.1:0 ENST00000680277.1:0 NM_001282205:0 NM_005866:0 BC010104:0 BC007839:0 AK222899:0 AK098451:0 U79528:0 U75283:0 BC004899:0 AK299130:0 AK291092:0 AY633611:0 BC006307:0 ENST00000461426.1:-2 ENST00000680730.1:-15 ENST00000477726.1:-15 AK130502:-15 ENST00000681409.1:-22 KJ892987:25 AF226604:25 DQ644568:25 DQ647702:25 DQ656583:25 CR457075:25 DQ892881:25 DQ896130:25 KJ906030:25 NM_001282208:-32 NM_001282209:-32 NM_001282207:-32 NM_001282206:-32 NM_147157:-32 NR_104108:-32 ENST00000497006.2:-50 ENST00000478146.1:310 |
TATA-Box annotation
| Distance to TSS: | 29 |
|---|---|
| Nearest PromoterID: | NM_001282205 |
| Entrez ID: | 10280 |
| Nearest Unigene: | Hs.522087 |
| Nearest Refseq: | NM_005866 |
| Nearest Ensembl: | ENSG00000147955 |
| Gene Name: | sigma non-opioid intracellular receptor 1 |
| Gene Alias: | ALS16 |
| Gene Description: | sigma non-opioid intracellular receptor 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.135 |
| GC%: | 0.78607 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
