Difference between revisions of "TSS:Hg 100565.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|XRCC9= | |XRCC9= | ||
| − | |all_trans= | + | |all_trans=AJ007669:-5 KU159422:-36 ENST00000378643.8:45 ENST00000448890.1:45 NM_004629:45 AK312987:46 AK293427:86 BC011623:198 ENST00000425676.5:294 AK311348:294 ENST00000462124.1:318 BC000032:325 U70310:329 DQ892166:458 DQ895360:458 AB464437:461 KJ891145:462 KR709811:462 KR709812:462 KR709813:462 CU674000:462 BT009813:463 KU178053:463 KU178054:463 KU178055:463 KU178056:463 KU178057:463 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.105 | |cpg_percent=0.105 | ||
| Line 10: | Line 10: | ||
|entrez_id=2189 | |entrez_id=2189 | ||
|gc_percent=0.716418 | |gc_percent=0.716418 | ||
| − | |gene_alias=FAG | + | |gene_alias=FAG|XRCC9 |
| − | |gene_description= | + | |gene_description=FA complementation group G |
|gene_id=2189 | |gene_id=2189 | ||
| − | |gene_name= | + | |gene_name=FA complementation group G |
|gene_source=HGNC:3588 | |gene_source=HGNC:3588 | ||
|gene_symbol=FANCG | |gene_symbol=FANCG | ||
| Line 23: | Line 23: | ||
|nearest_refseq=NM_004629 | |nearest_refseq=NM_004629 | ||
|nearest_unigene=Hs.591084 | |nearest_unigene=Hs.591084 | ||
| − | |num_trans= | + | |num_trans=27 |
|species=human | |species=human | ||
|start=35079986 | |start=35079986 | ||
|start_of_center_position=35079998 | |start_of_center_position=35079998 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=AJ007669 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_100565.1 | |tss_id=hg_100565.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id= |
}} | }} | ||
Revision as of 15:22, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 35079998 |
|---|---|
| End of the center position in the TSS region: | 35079999 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AJ007669 |
|---|---|
| Distance: | -5 |
| Num_trans: | 27 |
| All_trans: | AJ007669:-5 KU159422:-36 ENST00000378643.8:45 ENST00000448890.1:45 NM_004629:45 AK312987:46 AK293427:86 BC011623:198 ENST00000425676.5:294 AK311348:294 ENST00000462124.1:318 BC000032:325 U70310:329 DQ892166:458 DQ895360:458 AB464437:461 KJ891145:462 KR709811:462 KR709812:462 KR709813:462 CU674000:462 BT009813:463 KU178053:463 KU178054:463 KU178055:463 KU178056:463 KU178057:463 |
TATA-Box annotation
| Distance to TSS: | 17 |
|---|---|
| Nearest PromoterID: | NM_004629 |
| Entrez ID: | 2189 |
| Nearest Unigene: | Hs.591084 |
| Nearest Refseq: | NM_004629 |
| Nearest Ensembl: | ENSG00000221829 |
| Gene Name: | FA complementation group G |
| Gene Alias: | FAG |
| Gene Description: | FA complementation group G |
| Gene Type: | protein-coding |
| CpG%: | 0.105 |
| GC%: | 0.716418 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
