Difference between revisions of "TSS:Hg 100597.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|SIT-R= | |SIT-R= | ||
| − | |all_trans=ENST00000486859.5 | + | |all_trans=ENST00000486859.5:76 AK093793:-155 AB527705:-308 ENST00000474403.1:-362 ENST00000259608.8:-383 NM_014450:-383 AK314758:-383 AJ010059:-392 JQ924063:-392 BC102029:-400 BC104491:-400 BC107484:-400 ENST00000618781.1:-402 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
|distance=76 | |distance=76 | ||
| − | |distance_to_tss= | + | |distance_to_tss=384 |
|end=35650548 | |end=35650548 | ||
|end_of_center_position=35650547 | |end_of_center_position=35650547 | ||
|entrez_id=27240 | |entrez_id=27240 | ||
|gc_percent=0.597015 | |gc_percent=0.597015 | ||
| − | |gene_alias=SIT | + | |gene_alias=SIT|SIT-R |
|gene_description=signaling threshold regulating transmembrane adaptor 1 | |gene_description=signaling threshold regulating transmembrane adaptor 1 | ||
|gene_id=27240 | |gene_id=27240 | ||
| Line 23: | Line 23: | ||
|nearest_refseq=NM_014450 | |nearest_refseq=NM_014450 | ||
|nearest_unigene=Hs.88012 | |nearest_unigene=Hs.88012 | ||
| − | |num_trans= | + | |num_trans=13 |
|species=human | |species=human | ||
|start=35650545 | |start=35650545 | ||
|start_of_center_position=35650546 | |start_of_center_position=35650546 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-53(CCTCTTAGGGGC,+,0.00) |
| − | |transcript_name=ENST00000486859.5 | + | |transcript_name=ENST00000486859.5 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_100597.1 | |tss_id=hg_100597.1 | ||
Revision as of 15:23, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 35650546 |
|---|---|
| End of the center position in the TSS region: | 35650547 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000486859.5 |
|---|---|
| Distance: | 76 |
| Num_trans: | 13 |
| All_trans: | ENST00000486859.5:76 AK093793:-155 AB527705:-308 ENST00000474403.1:-362 ENST00000259608.8:-383 NM_014450:-383 AK314758:-383 AJ010059:-392 JQ924063:-392 BC102029:-400 BC104491:-400 BC107484:-400 ENST00000618781.1:-402 |
TATA-Box annotation
| Distance to TSS: | 384 |
|---|---|
| Nearest PromoterID: | NM_014450 |
| Entrez ID: | 27240 |
| Nearest Unigene: | Hs.88012 |
| Nearest Refseq: | NM_014450 |
| Nearest Ensembl: | ENSG00000137078 |
| Gene Name: | signaling threshold regulating transmembrane adaptor 1 |
| Gene Alias: | SIT |
| Gene Description: | signaling threshold regulating transmembrane adaptor 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.03 |
| GC%: | 0.597015 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -53(CCTCTTAGGGGC,+,0.00) |
