Difference between revisions of "TSS:Hg 100618.1"
From referenceTSS
| Line 5: | Line 5: | ||
|NEM4= | |NEM4= | ||
|TMSB= | |TMSB= | ||
| − | |all_trans= | + | |all_trans=ENST00000644325.1:308 ENST00000607559.1:-341 M12126:-343 ENST00000486018.1:-418 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
| − | |distance= | + | |distance=308 |
| − | |distance_to_tss= | + | |distance_to_tss=4808 |
|end=35685125 | |end=35685125 | ||
|end_of_center_position=35685118 | |end_of_center_position=35685118 | ||
|entrez_id=7169 | |entrez_id=7169 | ||
|gc_percent=0.621891 | |gc_percent=0.621891 | ||
| − | |gene_alias=AMCD1 | + | |gene_alias=AMCD1|DA1|DA2B|DA2B4|HEL-S-273|NEM4|TMSB |
| − | |gene_description=tropomyosin 2 | + | |gene_description=tropomyosin 2 |
|gene_id=7169 | |gene_id=7169 | ||
| − | |gene_name=tropomyosin 2 | + | |gene_name=tropomyosin 2 |
|gene_source=HGNC:12011 | |gene_source=HGNC:12011 | ||
|gene_symbol=TPM2 | |gene_symbol=TPM2 | ||
| Line 24: | Line 24: | ||
|hgnc_mgi_id=HGNC:12011 | |hgnc_mgi_id=HGNC:12011 | ||
|nearest_ensembl=ENSG00000198467 | |nearest_ensembl=ENSG00000198467 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001301226 |
|nearest_refseq=NM_003289 | |nearest_refseq=NM_003289 | ||
|nearest_unigene=Hs.300772 | |nearest_unigene=Hs.300772 | ||
| − | |num_trans= | + | |num_trans=4 |
|species=human | |species=human | ||
|start=35685109 | |start=35685109 | ||
|start_of_center_position=35685117 | |start_of_center_position=35685117 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=ENST00000644325.1 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_100618.1 | |tss_id=hg_100618.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=A0A2R8Y6A3 |
}} | }} | ||
Revision as of 15:24, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 35685117 |
|---|---|
| End of the center position in the TSS region: | 35685118 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000644325.1 |
|---|---|
| Distance: | 308 |
| Num_trans: | 4 |
| All_trans: | ENST00000644325.1:308 ENST00000607559.1:-341 M12126:-343 ENST00000486018.1:-418 |
TATA-Box annotation
| Distance to TSS: | 4808 |
|---|---|
| Nearest PromoterID: | NM_001301226 |
| Entrez ID: | 7169 |
| Nearest Unigene: | Hs.300772 |
| Nearest Refseq: | NM_003289 |
| Nearest Ensembl: | ENSG00000198467 |
| Gene Name: | tropomyosin 2 |
| Gene Alias: | AMCD1 |
| Gene Description: | tropomyosin 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.02 |
| GC%: | 0.621891 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
