Difference between revisions of "TSS:Hg 100647.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|LZIP= | |LZIP= | ||
| − | |all_trans=BC042923:47 AF078828:79 AF177198:97 BC021005:-117 ENST00000378192.2 | + | |all_trans=LF354354:24 MA589931:24 ENST00000314888.10:33 NM_006289:33 BC042923:47 AF078828:79 AF177198:97 BC021005:-117 ENST00000378192.2:124 BC020881:124 AB028950:-126 LF354355:-201 MA589932:-201 LF206432:-406 MA442009:-406 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.11 | |cpg_percent=0.11 | ||
| − | |distance= | + | |distance=24 |
| − | |distance_to_tss=- | + | |distance_to_tss=-41 |
|end=35732244 | |end=35732244 | ||
|end_of_center_position=35732236 | |end_of_center_position=35732236 | ||
| − | |entrez_id= | + | |entrez_id=7094 |
|gc_percent=0.746269 | |gc_percent=0.746269 | ||
| − | |gene_alias= | + | |gene_alias=ILWEQ|TLN|talin-1 |
| − | |gene_description= | + | |gene_description=talin 1 |
|gene_id=7094 | |gene_id=7094 | ||
| − | |gene_name= | + | |gene_name=TLN1 |
|gene_source=HGNC:11845 | |gene_source=HGNC:11845 | ||
|gene_symbol=TLN1 | |gene_symbol=TLN1 | ||
| Line 19: | Line 19: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:11845 | |hgnc_mgi_id=HGNC:11845 | ||
| − | |nearest_ensembl= | + | |nearest_ensembl=ENSG00000137076 |
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_006289 |
| − | |nearest_refseq= | + | |nearest_refseq=NM_006289 |
| − | |nearest_unigene=Hs. | + | |nearest_unigene=Hs.471014 |
| − | |num_trans= | + | |num_trans=15 |
|sLZIP= | |sLZIP= | ||
|species=human | |species=human | ||
| Line 29: | Line 29: | ||
|start_of_center_position=35732235 | |start_of_center_position=35732235 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=LF354354 MA589931 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_100647.1 | |tss_id=hg_100647.1 | ||
Revision as of 15:24, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 35732235 |
|---|---|
| End of the center position in the TSS region: | 35732236 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF354354 MA589931 |
|---|---|
| Distance: | 24 |
| Num_trans: | 15 |
| All_trans: | LF354354:24 MA589931:24 ENST00000314888.10:33 NM_006289:33 BC042923:47 AF078828:79 AF177198:97 BC021005:-117 ENST00000378192.2:124 BC020881:124 AB028950:-126 LF354355:-201 MA589932:-201 LF206432:-406 MA442009:-406 |
TATA-Box annotation
| Distance to TSS: | -41 |
|---|---|
| Nearest PromoterID: | NM_006289 |
| Entrez ID: | 7094 |
| Nearest Unigene: | Hs.471014 |
| Nearest Refseq: | NM_006289 |
| Nearest Ensembl: | ENSG00000137076 |
| Gene Name: | TLN1 |
| Gene Alias: | ILWEQ |
| Gene Description: | talin 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.11 |
| GC%: | 0.746269 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
