Difference between revisions of "TSS:Hg 100681.1"
From referenceTSS
| Line 4: | Line 4: | ||
|NM= | |NM= | ||
|Uae1= | |Uae1= | ||
| − | |all_trans= | + | |all_trans=LP895623:52 ENST00000642385.2:57 NM_001190384:57 NM_001190383:57 NM_001374797:57 NM_001374798:57 NM_005476:57 ENST00000539208.5:60 AK295562:60 BC121179:101 ENST00000447283.6:176 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.15 | |cpg_percent=0.15 | ||
| − | |distance= | + | |distance=52 |
| − | |distance_to_tss=- | + | |distance_to_tss=-58 |
|end=36258507 | |end=36258507 | ||
|end_of_center_position=36258506 | |end_of_center_position=36258506 | ||
|entrez_id=10020 | |entrez_id=10020 | ||
|gc_percent=0.711443 | |gc_percent=0.711443 | ||
| − | |gene_alias=DMRV | + | |gene_alias=DMRV|GLCNE|IBM2|NM|Uae1 |
|gene_description=glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase | |gene_description=glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase | ||
|gene_id=10020 | |gene_id=10020 | ||
| − | |gene_name= | + | |gene_name=GNE |
|gene_source=HGNC:23657 | |gene_source=HGNC:23657 | ||
|gene_symbol=GNE | |gene_symbol=GNE | ||
| Line 23: | Line 23: | ||
|hgnc_mgi_id=HGNC:23657 | |hgnc_mgi_id=HGNC:23657 | ||
|nearest_ensembl=ENSG00000159921 | |nearest_ensembl=ENSG00000159921 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001190383 |
|nearest_refseq=NM_005476 | |nearest_refseq=NM_005476 | ||
|nearest_unigene=Hs.5920 | |nearest_unigene=Hs.5920 | ||
| Line 31: | Line 31: | ||
|start_of_center_position=36258505 | |start_of_center_position=36258505 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=LP895623 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_100681.1 | |tss_id=hg_100681.1 | ||
Revision as of 15:25, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 36258505 |
|---|---|
| End of the center position in the TSS region: | 36258506 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LP895623 |
|---|---|
| Distance: | 52 |
| Num_trans: | 11 |
| All_trans: | LP895623:52 ENST00000642385.2:57 NM_001190384:57 NM_001190383:57 NM_001374797:57 NM_001374798:57 NM_005476:57 ENST00000539208.5:60 AK295562:60 BC121179:101 ENST00000447283.6:176 |
TATA-Box annotation
| Distance to TSS: | -58 |
|---|---|
| Nearest PromoterID: | NM_001190383 |
| Entrez ID: | 10020 |
| Nearest Unigene: | Hs.5920 |
| Nearest Refseq: | NM_005476 |
| Nearest Ensembl: | ENSG00000159921 |
| Gene Name: | GNE |
| Gene Alias: | DMRV |
| Gene Description: | glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase |
| Gene Type: | protein-coding |
| CpG%: | 0.15 |
| GC%: | 0.711443 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
