Difference between revisions of "TSS:Hg 100711.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|BSAP= | |BSAP= | ||
| + | |all_trans=ENST00000651550.1:24 | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.045 | |cpg_percent=0.045 | ||
| − | |distance= | + | |distance=24 |
| − | |distance_to_tss= | + | |distance_to_tss=8490 |
|end=37025784 | |end=37025784 | ||
|end_of_center_position=37025778 | |end_of_center_position=37025778 | ||
|entrez_id=5079 | |entrez_id=5079 | ||
|gc_percent=0.532338 | |gc_percent=0.532338 | ||
| − | |gene_alias=ALL3 | + | |gene_alias=ALL3|BSAP |
|gene_description=paired box 5 | |gene_description=paired box 5 | ||
| − | |gene_name=PAX5 | + | |gene_id=5079 |
| + | |gene_name=paired box 5 | ||
| + | |gene_source=HGNC:8619 | ||
| + | |gene_symbol=PAX5 | ||
| + | |gene_synonyms=BSAP | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:8619 | ||
|nearest_ensembl=ENSG00000196092 | |nearest_ensembl=ENSG00000196092 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001280547 |
|nearest_refseq=NM_016734 | |nearest_refseq=NM_016734 | ||
|nearest_unigene=Hs.654464 | |nearest_unigene=Hs.654464 | ||
| − | |num_trans= | + | |num_trans=1 |
|species=human | |species=human | ||
|start=37025771 | |start=37025771 | ||
|start_of_center_position=37025777 | |start_of_center_position=37025777 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-85(CCCTTTAAAAAA,-,0.00) |
| − | |transcript_name= | + | |transcript_name=ENST00000651550.1 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_100711.1 | |tss_id=hg_100711.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id=E7ERK2 | ||
}} | }} | ||
Revision as of 15:26, 15 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 37025777 |
|---|---|
| End of the center position in the TSS region: | 37025778 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000651550.1 |
|---|---|
| Distance: | 24 |
| Num_trans: | 1 |
| All_trans: | ENST00000651550.1:24 |
TATA-Box annotation
| Distance to TSS: | 8490 |
|---|---|
| Nearest PromoterID: | NM_001280547 |
| Entrez ID: | 5079 |
| Nearest Unigene: | Hs.654464 |
| Nearest Refseq: | NM_016734 |
| Nearest Ensembl: | ENSG00000196092 |
| Gene Name: | paired box 5 |
| Gene Alias: | ALL3 |
| Gene Description: | paired box 5 |
| Gene Type: | protein-coding |
| CpG%: | 0.045 |
| GC%: | 0.532338 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -85(CCCTTTAAAAAA,-,0.00) |
