Difference between revisions of "TSS:Hg 100717.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
|BSAP= | |BSAP= | ||
| − | |all_trans= | + | |all_trans=ENST00000520154.6:-25 M96944:45 ENST00000358127.9:-108 ENST00000377852.7:-108 ENST00000523241.6:-108 NM_001280548:-108 NM_001280556:-108 NM_001280547:-108 NR_104000:-108 NM_016734:-108 NM_001280550:-108 NM_001280554:-108 NM_001280553:-108 NM_001280552:-108 NM_001280551:-108 NM_001280549:-108 NM_001280555:-108 NR_103999:-108 ENST00000377853.6:110 ENST00000377840.6:110 AY463952:110 AY463953:110 AY463954:110 AY463955:110 AY463956:110 AY463957:110 ENST00000520281.5:120 ENST00000446742.5:120 ENST00000522003.5:120 ENST00000523145.5:120 ENST00000523493.5:120 ENST00000414447.5:120 ENST00000377847.6:120 FJ626419:120 FJ626420:120 FJ626421:120 FJ626422:120 FJ626423:120 FJ626424:120 FJ626425:120 BC156189:120 BC156927:120 AB529192:120 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.045 | |cpg_percent=0.045 | ||
|distance=-25 | |distance=-25 | ||
| − | |distance_to_tss= | + | |distance_to_tss=113 |
|end=37034160 | |end=37034160 | ||
|end_of_center_position=37034156 | |end_of_center_position=37034156 | ||
|entrez_id=5079 | |entrez_id=5079 | ||
|gc_percent=0.432836 | |gc_percent=0.432836 | ||
| − | |gene_alias=ALL3 | + | |gene_alias=ALL3|BSAP |
|gene_description=paired box 5 | |gene_description=paired box 5 | ||
|gene_id=5079 | |gene_id=5079 | ||
| Line 20: | Line 20: | ||
|hgnc_mgi_id=HGNC:8619 | |hgnc_mgi_id=HGNC:8619 | ||
|nearest_ensembl=ENSG00000196092 | |nearest_ensembl=ENSG00000196092 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001280547 |
|nearest_refseq=NM_016734 | |nearest_refseq=NM_016734 | ||
|nearest_unigene=Hs.654464 | |nearest_unigene=Hs.654464 | ||
| − | |num_trans= | + | |num_trans=43 |
|species=human | |species=human | ||
|start=37034150 | |start=37034150 | ||
|start_of_center_position=37034155 | |start_of_center_position=37034155 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=ENST00000520154.6 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_100717.1 | |tss_id=hg_100717.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=E7ERW5 |
}} | }} | ||
Revision as of 15:26, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 37034155 |
|---|---|
| End of the center position in the TSS region: | 37034156 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000520154.6 |
|---|---|
| Distance: | -25 |
| Num_trans: | 43 |
| All_trans: | ENST00000520154.6:-25 M96944:45 ENST00000358127.9:-108 ENST00000377852.7:-108 ENST00000523241.6:-108 NM_001280548:-108 NM_001280556:-108 NM_001280547:-108 NR_104000:-108 NM_016734:-108 NM_001280550:-108 NM_001280554:-108 NM_001280553:-108 NM_001280552:-108 NM_001280551:-108 NM_001280549:-108 NM_001280555:-108 NR_103999:-108 ENST00000377853.6:110 ENST00000377840.6:110 AY463952:110 AY463953:110 AY463954:110 AY463955:110 AY463956:110 AY463957:110 ENST00000520281.5:120 ENST00000446742.5:120 ENST00000522003.5:120 ENST00000523145.5:120 ENST00000523493.5:120 ENST00000414447.5:120 ENST00000377847.6:120 FJ626419:120 FJ626420:120 FJ626421:120 FJ626422:120 FJ626423:120 FJ626424:120 FJ626425:120 BC156189:120 BC156927:120 AB529192:120 |
TATA-Box annotation
| Distance to TSS: | 113 |
|---|---|
| Nearest PromoterID: | NM_001280547 |
| Entrez ID: | 5079 |
| Nearest Unigene: | Hs.654464 |
| Nearest Refseq: | NM_016734 |
| Nearest Ensembl: | ENSG00000196092 |
| Gene Name: | paired box 5 |
| Gene Alias: | ALL3 |
| Gene Description: | paired box 5 |
| Gene Type: | protein-coding |
| CpG%: | 0.045 |
| GC%: | 0.432836 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
